Hymenobacter canadensis: O3303_18555
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Entry
O3303_18555 CDS
T09156
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
hcw
Hymenobacter canadensis
Pathway
hcw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O3303_18555 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcw03019
]
O3303_18555 (rny)
Messenger RNA biogenesis [BR:
hcw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O3303_18555 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF4954
YtxH
KH-I_KHDC4-BBP
NttC
KH_2
Motif
Other DBs
NCBI-ProteinID:
WBA41799
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All DBs
Position
4344632..4346329
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AA seq
565 aa
AA seq
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MSTTLYIALAAVLALVVGIVVGRLLAGKTNQDHEAEAKTRAQQLLAEAEQQATRTRDERI
QQSKDKFRTLKQEWEQESRRQKLALDQELTERRATVVEQEQAIKKLTDTTQRQLEQIQRK
ETELDATRERIETQSQQQREKLETQEEKRKAVLENQLAKLEQREQEVEAELAETRQELTE
KLQQVNTQLEAISGLTAAEAREQLVESLKNEAQIQASSYIKDVVAQAKLSATKDAKKVVL
ETIQRTAAEHAIENCVSVFNIESDDVKGKIIGREGRNIRALEAATGVEIIVDDTPEAIII
SGFDPVRREVARLSLHLLVKDGRIHPARIEEIVAKTRKNIDEEIVEIGEKTIIDLGIHGL
HPELIKMVGRMRFRSSYGQNLLQHSREVANLCATMAAEMGLDVKKAKRAGLLHDIGKVST
EEPELPHAILGMEMAKKYKEHPDVVNAIGAHHDEIEMTAMISPLVQACDAISGSRPGARR
EMMESYIKRLKQLEETANGFKGVNQCFAIQAGRELRVMVDAENVTDERASELSYEISQKI
EKEMQYPGQIKITVIREMRAVAYAK
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtccactactctttatattgctctagccgccgtgctggcccttgtggtcggcatcgtg
gtggggcgcctcttggctggcaaaaccaaccaggaccacgaagccgaagctaaaacccgt
gcccaacagctgctggccgaagccgagcagcaggccacccgcacccgcgacgagcggatt
cagcagtcgaaagacaagttccgcaccctcaagcaggagtgggagcaggagagccgccgc
cagaagctggccctcgaccaggagctgaccgagcgccgcgccaccgtggtagagcaggag
caggccatcaagaaactcaccgacaccacccagcgtcagctggagcagatccagcgcaag
gaaaccgagctggacgccacccgcgagcgaatcgaaactcagtcgcagcagcagcgcgag
aagctggaaacgcaggaggaaaagcgcaaggccgtcttggaaaatcagctggccaagctg
gagcagcgcgagcaggaggtagaagccgagctggccgaaacccgccaggagctaaccgaa
aagctgcagcaggtaaacacgcagctggaagccatttcgggcctgacggccgccgaagcc
cgcgagcagctggtggagtcgctcaaaaacgaagcccagattcaggccagctcctacatc
aaggacgtggtggcccaggccaagctttcggccaccaaagacgccaagaaagtggtgctg
gaaactatccagcgcaccgctgccgagcacgccatcgagaactgcgtatcggtgttcaac
atcgagagcgacgacgtcaagggcaagattatcggtcgtgagggccgcaacatccgggcc
ctggaagccgctactggtgtcgaaattatcgtggacgacacgcccgaggccatcatcatc
tcgggcttcgatccggtgcgccgcgaggtagcccgcctgagcttgcacctgctggtgaag
gacggccgaattcacccggctcgtatcgaggagattgtggccaaaacccgcaagaacatc
gacgaggaaatcgtggaaatcggggagaaaaccatcatcgacctcggcatccatggcctg
caccccgagctgattaagatggtgggccgcatgcgcttccgcagcagctacggccagaat
ctgctccagcactcgcgcgaagtcgccaacctctgcgccaccatggctgccgaaatgggc
ctcgacgtgaagaaagccaagcgcgccggcctgctccacgacatcggcaaagtaagcacc
gaagagcccgagttgccccacgcaattctgggcatggagatggccaagaagtacaaggag
caccccgacgtggtaaacgccatcggcgcccaccacgacgaaattgaaatgacggccatg
atttcgccgctggtgcaggcctgcgacgccatttcgggctcgcgccccggtgcccgccgc
gagatgatggagagctacatcaagcgcctcaagcagctggaagaaaccgccaacggcttc
aagggcgtaaaccagtgcttcgccatccaggccggccgcgagctgcgcgtgatggtggac
gccgagaacgtgacggacgagcgcgcttcggagctgagctacgaaatttcccagaaaatc
gagaaggaaatgcagtaccccggccagatcaaaatcacggttatccgcgaaatgcgtgcc
gtggcctacgccaagtaa
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