Hydrogenophaga crocea: G9Q37_01180
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Entry
G9Q37_01180 CDS
T08489
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hcz
Hydrogenophaga crocea
Pathway
hcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G9Q37_01180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcz03019
]
G9Q37_01180
03009 Ribosome biogenesis [BR:
hcz03009
]
G9Q37_01180
Enzymes [BR:
hcz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
G9Q37_01180
Messenger RNA biogenesis [BR:
hcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G9Q37_01180
Ribosome biogenesis [BR:
hcz03009
]
Prokaryotic type
rRNA processing factors
G9Q37_01180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QIM50835
UniProt:
A0A6G8ICP9
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All DBs
Position
complement(254507..257464)
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AA seq
985 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEIARQYFQGNVSPSQARIQDVIKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGDERAELKAALDQLEYPNGMSIIARTAGIGREAPELQ
WDLNYLLKLWTAIDGAAQSGKGAFLIYQESSLVIRAIRDYFNSDIGEILIDTDDIFEQAH
QFMSHVMPEHGHRVKRYRDDAPLFSRFQIEHQIETAYSRIVQLPSGGAIVIDQTEALVAV
DVNSARAIKGGDIEETATRTNLEAADEVARQARLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFASISKFGLLEMSRQRLKPALNEGASIPCPRCGGSGHIRDTESSALQ
ILRVIQEESLKDSTAAVLVQVPVEVASFLLNEKRTEITKIELKQRISVLLVPNKSLDTPN
YKLERLKHDDPRLDNLDSSYKLAEEVDDVASFTRRSQERTNKQEPVIKGVLPDAPAPVAV
PKPEQPAPAPVAAPVAPAPVAAAPAEKGFFGWLKGLFGGGAAPAPAAPAPAAATPAARDG
ARTEGRREGGRDGGRGRRGGRGAERGEGRDNREGRNGQREAQSPREAGADGQPRGNRGEN
RRNGEARPEGRNGQREGQRDSATPRDAGAEGQRSEQARPERQGEGRRGERRGERREAAPA
DATNELAQAVPASEAAEGSEQPPRRERGERGGRGRGRDGERRRPEGQDAPRADESAEQPQ
AEAVTTAEGSAEGGDEQAPRERRSRDRYGRDRRGDRRERPAREGGEAPAEAGDTQPMAEA
ADTAAEQDAAPVRSYFTMPAPAAATAAPAAPVVAAPTPVSAAPAPVAAPAPAAPAAPTTA
RAMPAVQAYTLSVPELQAVAAASGLEWVNSDAEKVAQAQAAIAAEPKPVHVPREPKPVVV
LDEGPLVLVETRKDLSQVVLPFETR
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaatgccacgcaggccgaagagcgccgcctggcgatcgtggac
gggcagaaactgctcgactacgagatcgagatcgaagggcgcgaacagcgcaagggcaac
atctacaaggcggtggtcacgcgcgtcgagccctcgctcgaagcctgcttcgtcgactac
ggcgaagaccgccacggcttcctgccgttcaaggaaattgcgcgccagtatttccagggc
aatgtgtcgccgtcgcaggcgcgcatccaggacgtcatcaaggaaggccaggagctcatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgccgcactcaccaccttcatcagc
ctggccggccgctacgtggtgctgatgcccaacaacccgcgcggcggtggcgtgagccgc
cgcatcgagggcgacgaacgcgccgaactcaaggccgcgctcgaccagctcgagtacccc
aacggcatgagcatcatcgcgcgcaccgccggcatcggccgcgaagcgcccgagctgcag
tgggacctgaactacctgctcaagctctggaccgcgatcgacggcgccgcgcaatcgggc
aagggcgccttcctgatctaccaggaatcgagcctggtgatccgcgccatccgcgactac
ttcaacagcgacatcggcgagatcctcatcgacaccgatgacatcttcgagcaggcgcac
cagttcatgagccacgtgatgcccgagcacgggcaccgcgtgaagcgctaccgcgacgac
gcgccgctgttcagccgcttccagatcgagcaccagatcgagaccgcgtacagccgcatc
gtgcagctgcccagcggcggcgcgatcgtgatcgaccagaccgaagccctggtggccgtg
gacgtgaactcggcgcgcgccatcaagggcggcgacatcgaagaaaccgccacgcgcacc
aacctcgaggccgccgacgaagtggcccgccaggcccgcctgcgcgacctcggtggcctg
atcgtgatcgacttcatcgacatggaggagagcaagaaccgccgcgaggtcgagaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcccgcgtgcagttcgcctccatcagcaagttc
ggcctgctcgaaatgagccgccagcgcctcaagcccgcgctcaacgaaggcgcgtccatc
ccctgcccgcgctgcggcggctccggccacatccgcgacaccgagtcctcggcgctgcag
atcctgcgcgtgatccaggaagagtcgctcaaggacagcacggccgccgtgctggtgcag
gtgccggtcgaggtcgccagcttcctgctcaacgagaagcgcaccgagatcaccaagatc
gaactcaagcagcgcatcagcgtgctgctcgtgcccaacaagtcgctcgacacccccaac
tacaagctcgagcgcctcaagcacgacgacccgcgcctggacaacctcgactcgagctac
aagctcgccgaggaagtcgacgacgtggccagcttcacgcgccgcagccaggagcgcacc
aacaagcaggagcccgtgatcaagggcgtgctgcccgacgcgcccgcgccggtggccgtg
cccaagcccgagcagcccgcgcccgccccggtggctgcgcccgtggccccggccccggtg
gccgctgccccggccgaaaaaggcttcttcggctggctcaagggcctgttcggcggcggc
gcagcgcccgcgccggccgccccggcgcccgccgctgccaccccggccgcgcgcgacggc
gcgcgcaccgaaggccgccgtgaaggcggccgcgacggtggccgtggccgccgcggtggc
cgtggcgcagagcgtggtgagggccgcgacaaccgcgaaggccgcaacggccagcgcgag
gctcagtcgccgcgcgaagccggggccgacggccagccgcggggcaaccgcggtgagaac
cgccgcaacggcgaagcccgtcccgaaggccgcaacggccagcgcgaaggtcagcgcgac
agcgcgaccccgcgcgacgctggcgccgaaggccagcgcagcgagcaggcacgccctgag
cgacaaggcgaaggccgccgcggtgaacgccgcggcgagcgccgcgaggccgcccccgcc
gacgccacgaacgaactggcccaggccgtgcccgcgagcgaagccgccgagggcagcgag
cagcccccgcgccgcgagcgtggcgaacgcggcggccgcggccgtggccgcgacggtgag
cgccgccgccccgagggccaggacgccccgcgcgccgacgagagcgccgagcagccccag
gccgaggccgtgaccacggccgaaggcagcgccgagggtggtgacgagcaggccccgcgc
gagcgccgcagccgcgaccgttatggccgcgaccgccgtggcgatcgccgcgagcgcccg
gcgcgtgaaggcggcgaagcccccgccgaagccggcgacacgcagcccatggccgaggcg
gccgacaccgcggccgagcaggatgcagcgcccgtgcgcagctacttcaccatgcccgct
ccggccgcggcaaccgccgcacccgcggcgccggtggtggccgcgcccaccccggtgagc
gccgccccggcgcccgtggccgctcccgcgccggcagcccccgcggcgccgaccaccgcg
cgcgccatgcccgcggtgcaggcctacacgctcagcgtgcccgagctgcaggccgtggcc
gcggccagcggcctcgagtgggtgaactccgacgccgagaaggtggcgcaggcgcaggcc
gcgatcgccgccgagcccaagcccgtccacgtgccgcgcgagcccaaacccgtggtcgtg
ctcgacgagggcccgctggtgctggtggaaacgcgcaaggacctgagccaggtcgtgctg
cccttcgagacccgctga
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