Hydrogenophaga crocea: G9Q37_06385
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Entry
G9Q37_06385 CDS
T08489
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hcz
Hydrogenophaga crocea
Pathway
hcz02020
Two-component system
hcz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hcz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
G9Q37_06385 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G9Q37_06385 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcz03021
]
G9Q37_06385 (rpoN)
Transcription machinery [BR:
hcz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G9Q37_06385 (rpoN)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_IclR
HTH_3
HTH_38
HTH_23
CENP-B_N
Motif
Other DBs
NCBI-ProteinID:
QIM51793
UniProt:
A0A6G8IF71
LinkDB
All DBs
Position
complement(1300114..1301562)
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AA seq
482 aa
AA seq
DB search
MGLEFRTETRQTQTLSPRLQRAVQLLQMSSLDFAALVRQKLGENPFLESDEDGETPADPD
RDTAGGPEATDPGADDTPREPDTWDAATPEAADDREIWTSDGPGQASGTGDGETSAMDLT
AGDTTLAMHLHAQLNLMPLSARDLCLARAIVDSLDDDGYLRTPLEEIAALVRGETTAHEG
DMLVALRLVQSLEPAGVAARGVGECLWLQVRLLPDEALRAVAGRIVTEHLDALAARDVPR
LAAALGEPIARVEAAVDRIRRLDPRPGWRLGSSRIDYIVPDVIVRRLRGQWAVQLNPAVV
PRVRLNQVYAQLYQQHSARQACPLGEHLQDARWTLRNVEQRFSTILDVARAIVRRQRHFL
EFGPMAMRPLVLREIAEEVGVHESTVSRVTNNKHMATPLGVFELKYFFSRPMVSASGGAC
SATAIRGLISDIIAGEDSSRPLSDAEITRQLAVQGLVVARRTVTKYRQLLRIDPVEKRRR
HS
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgggactggagttccgcaccgaaacccgccagacacaaaccctgtcgccgcggctgcag
cgcgccgttcagttgctgcaaatgtcttcgctcgacttcgcggcgctggtgcggcaaaag
ctcggcgaaaacccgtttctggagagcgacgaagacggcgagacacccgccgaccccgac
cgcgacaccgcgggcgggcccgaggccaccgacccaggcgcagacgacacaccgcgcgag
cccgacacctgggacgcggccacgcccgaggccgccgacgaccgcgagatctggaccagc
gatggcccgggtcaggccagcggcacgggcgatggcgagaccagcgccatggacctgacc
gcgggcgacaccacgctggccatgcacctgcacgcccagctcaacctcatgccgctgtcg
gcgcgcgacctgtgcctggcgcgcgccatcgtggattcgctcgacgacgacggctatctg
cgcacgccgctcgaggaaatcgccgccctcgtgcgcggcgaaaccaccgcgcacgagggc
gacatgcttgtggccctgcgcctggtgcagtcgctcgagcccgcgggcgtggccgcgcgc
ggcgtgggcgagtgcctgtggctgcaggtgcggctgctgcccgacgaggccctgcgtgcg
gtcgccgggcgcatcgtgaccgaacacctcgatgcgctggccgctcgcgacgtgccgcgc
ctggctgccgcgctgggcgagccgatcgcgcgcgtcgaggccgcggtcgaccgcatccgc
cggctcgacccgcgcccgggctggcgactgggctcctcgcgcatcgactacatcgtgccc
gacgtgatcgtgcggcgcctgcgcggccagtgggccgtgcagctcaacccggcggtggtg
ccacgcgtgcgcctgaaccaggtgtacgcgcagctctaccagcaacacagcgcgcgccag
gcctgcccactcggcgaacatctgcaggacgcgcgctggacgctgcgcaatgtggagcag
cgcttctcgaccatcctcgacgtggcacgcgccatcgtgcggcgccagcggcacttcctc
gagttcgggcccatggccatgcgcccgctggtgctgcgcgagatcgccgaggaagtgggg
gtgcacgaatcgacggtttcgcgcgtgaccaacaacaagcacatggccacgccgctgggc
gtgttcgagctcaagtacttcttctcgcgccccatggtgagtgccagcggcggtgcgtgc
tcggccaccgccatccgcgggctgatcagcgacatcatcgcgggtgaagacagcagccgt
ccgctgtcggacgccgagatcacgcgccagctcgcggtccagggcctggtggtggcgcgt
cgcacggtcaccaagtaccgccagctgctgcgcatcgacccggtggagaaacggcgccgg
cacagctga
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