Hydrogenophaga crocea: G9Q37_08960
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Entry
G9Q37_08960 CDS
T08489
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hcz
Hydrogenophaga crocea
Pathway
hcz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G9Q37_08960 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcz03400
]
G9Q37_08960 (mfd)
Enzymes [BR:
hcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G9Q37_08960 (mfd)
DNA repair and recombination proteins [BR:
hcz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G9Q37_08960 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QIM54719
UniProt:
A0A6G8INN0
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All DBs
Position
1889501..1892983
Genome browser
AA seq
1160 aa
AA seq
DB search
MPLPSLSPGKRHAMPLPVGSADALWLAHLAERERAQGRLTAIVTADANDAQRLIDELAFF
APELRVTLFPDWETLPYDTFSPHQDLISERLATLWRISQREHDGGADVVLVPATTALYRL
APPSFLAGYTFHFKVKQKLDEARLKSQLTLAGYHHVTQVVSPGEYAVRGGLIDLFPMGSL
VPYRVDLFDDEIDSIRTFDPDSQRSLYPVNEVRLLPGREFPMDDAARAKFRNRWRELLDG
DPTKSRIYKDMGNGVATAGIEYYLPLFFDDTATVFDYLGESATLVLHGELEPAFQRFWQD
TRERHRLLHGDPDRPILPPESLFLNAEQFFTAAKPHAQVVLRPGSADVGDNAFAQKLPEL
AVVRGADDPLARLQAHLRGSGDRMLILAESDGRRESLLDFLRASGLNPPAFDSLAEFEAS
DEKTGIATAALANGFAWIGGGIHFITETELFATGPTTRRRKKQEQVSDVDALIKDLSELN
VGDPVVHAAHGIGRYRGLVNLDMGEKNPDGSPALQEFLHLEYADKAVLYVPVSQLGLIGR
YTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDAAAELLNIYARRAARQGHPFRYSPQDYE
TFANDFGFDETPDQRAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQ
VAFLAPTTLLAEQHYQTLVDRFGKWPVKIAEMSRFRSQKEITAAMKGIADGSVDIVVGTH
KLLSEKAQFKNLGLLIIDEEHRFGVRHKEAMKQLRAEVDVLTLTATPIPRTLGMALEGLR
DLSVIATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVETIENRKARLEE
ILPEARIAIAHGQMPERELEHVMRDFVAQRFNVLLCSTIIETGIDVPTANTIVISRADKF
GLAQLHQLRGRVGRSHHQAYAYLLVPDMDSLTKQAAQRLDAIQQMEELGSGFYLAMHDLE
IRGAGEVLGENQSGNMLEVGFQLYNEMLSEAVKALKAGREPDLLAPLSVTTDINLHAPAL
LPNDYCGDVHLRLSFYKKLATAKTADQVDALLEEIVDRFGKLPPQAQTLIDVHRLRVLST
PYGVVKVDAAPGVTNITFKPNPPIEPLRIIELIQKHRHIKLAGNEKLRIERALPEVKDRV
QLVRDVLRALGQPIAPKQPA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atccccctgccctccctgagccccggcaaacgccacgccatgcccctgcccgtgggctcg
gccgacgccctgtggctggcccacctcgccgagcgtgagcgtgcgcaaggccgcctcacg
gccatcgtcaccgccgacgccaacgacgcccagcgcctgatcgacgaactcgccttcttc
gcgcccgagctgcgcgtgacgctgttccccgactgggaaaccctgccctacgacaccttc
tcgccgcaccaggacctgatcagcgagcgcctggccacgctctggcggatctcgcaacgc
gagcacgacggcggcgccgacgtggtgctggtgcccgccaccaccgcgctctaccggctc
gcgccgccgtccttcctggccggctacaccttccacttcaaggtcaagcaaaagctcgac
gaagcgcgcctgaagagccagctcacgctcgcgggctaccaccacgtgacgcaggtggtg
agcccgggcgagtacgcggtgcgcggcggcctgatcgacctgttccccatgggcagcctg
gtgccctaccgtgtcgacctgttcgacgacgagatcgacagcatccgcaccttcgacccc
gacagccagcgcagcctctacccggtcaacgaggtgcgcctgctgccgggccgcgaattc
cccatggacgacgcggcgcgcgccaaattccgcaaccgctggcgcgagctgctcgacggc
gacccgaccaagagccgcatctacaaggacatgggcaacggcgtggccaccgccggcatc
gagtactacctgccgctgttcttcgacgacacggccacggtgttcgactacctcggcgaa
agcgcgaccctggtgctgcacggcgagctcgaacccgccttccagcgcttctggcaggac
acgcgcgagcgccaccgcctgctgcacggcgaccccgaccggcccatcctgccgcccgaa
tcgctgttcctcaacgccgagcagttcttcaccgcggccaagccccacgcgcaggtcgtg
ctgcgccctggcagcgccgacgtgggcgacaacgccttcgcgcagaagctgcccgagctc
gccgtggtgcgcggcgccgacgacccgctcgcgcgcctgcaggcccacctgcgcggcagc
ggcgaccgcatgctgatcctggccgagagcgacggccgccgcgaaagcctgctcgacttc
ctgcgcgcgagcggcctgaacccgccggccttcgacagcctggccgagttcgaggccagc
gacgagaaaaccggcatcgccaccgccgcgctcgccaacggcttcgcctggatcggcggg
ggcatccacttcatcaccgagaccgagctctttgccaccggccccaccacgcgccgccgc
aagaagcaggaacaggtgagcgatgtggacgcgctcatcaaggacctgtccgagctcaac
gtgggcgacccggtggtgcacgcggcgcacggcatcggccgctaccgcggtctggtcaac
ctcgacatgggcgagaagaaccccgacggctcgcccgcgctgcaggagttcctgcacctc
gagtacgccgacaaggccgtgctctacgtgccggtgagccagctcggcctgatcggccgc
tacaccggcgtgagcgccgacgaggcgccgctgcacaagctgggcagcggccagtgggag
aaggccaagcgcaaggccgccgagcaggtgcgcgacgccgcggccgagctgctcaacatc
tacgcgcgccgcgccgcgcgccagggccacccgttccgctactcgccgcaagactacgag
accttcgccaacgatttcggcttcgacgaaacccccgaccagcgcgccgcgatccacgcc
gtcatccaggacatgatcagcccgcgccccatggaccgcctggtctgcggcgacgtgggc
ttcggcaagaccgaggtcgcgctgcgcgcggccttcgtggccgtgaccggcggcaagcag
gtggcctttctcgcgcccaccacgctgctggccgagcagcactaccagaccctggtggac
cgcttcggcaagtggccggtgaagatcgccgagatgagccgcttccgctcgcagaaagag
atcaccgcggccatgaagggcattgccgacggctcggtcgacatcgtggtgggcacgcac
aagctgctgtcggagaaggcgcagttcaagaacctgggcctgctcatcatcgacgaagag
caccgcttcggcgtgcgccacaaggaggccatgaagcagctgcgcgccgaggtcgacgtg
ctcacgctcaccgccacgcccatcccgcgcaccctgggcatggcgctcgaaggcctgcgc
gacctgagtgtgatcgccaccgcgccgcagcgccgcctggccatcaagaccttcgtgcgc
aacgaaggcaacggcgtgatccgcgaggccgtgctgcgcgagttgaagcgcggcggccag
gtgtacttcctgcacaacgaggtcgagaccatcgagaaccgcaaggcgcggctcgaagag
atcctgcccgaggcgcgcatcgccatcgcccacggccagatgcccgagcgcgagctcgag
cacgtgatgcgcgacttcgtggcgcagcgcttcaacgtgctgctgtgctcgaccatcatc
gagaccggcatcgacgtgcccacggccaacaccatcgtcatcagccgcgccgacaagttc
ggcctggcgcagctgcaccagctgcgcggccgcgtgggccgcagccaccaccaggcctac
gcctacctgctggtgcccgacatggacagcctgaccaagcaggccgcgcagcggctcgac
gccatccagcagatggaagaactgggcagcggcttctacctcgccatgcacgacctggag
atccgcggcgcgggcgaggtgctgggcgagaaccagagcggcaacatgctcgaggtgggc
ttccagctctacaacgagatgctgtccgaggcggtgaaggcgctcaaggccggccgcgag
cccgacctgctcgcgccgctgtcggtcaccaccgacatcaacctgcacgcgcccgcgctg
ctgcccaacgactactgcggcgacgtgcacctgcgcctgtccttctacaagaagctcgcc
accgccaagaccgccgaccaggtggacgcgctgctcgaagaaatcgtggaccgcttcggc
aagctgccgccgcaggcgcagacgctgatcgacgtgcaccgcctgcgcgtgctcagcacg
ccctacggcgtggtgaaggtcgacgccgcgcccggcgtcacgaacatcactttcaagccc
aacccgccgatcgagcccctgcgcatcatcgagctgatccagaagcaccgccacatcaag
ctcgcgggcaacgaaaaactgcgcatcgaacgggccctgcccgaggtgaaagaccgcgtg
cagctggtgcgcgacgtgctgcgcgcgctcggccaacccatcgccccgaaacaacccgca
tga
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