Natronorubrum daqingense: BB347_07645
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Entry
BB347_07645 CDS
T04679
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hda
Natronorubrum daqingense
Pathway
hda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BB347_07645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hda03019
]
BB347_07645
Messenger RNA biogenesis [BR:
hda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BB347_07645
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
APX96498
UniProt:
A0A1N7ED20
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All DBs
Position
1560613..1561965
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AA seq
450 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRAGDDVVIFDMGLNLSQVLIHDNVETERMHSLDLIDMGA
IPDDRIMSDLEGDVQAIVPTHGHLDHIGAISKLAHRYDAPIVATPFTIELVKQQIEGEQK
FGVENDLIKMDAGETMSIGDSGKVDLEFVNVTHSIIDAINPVLHTPEGAVVYGLDKRMDH
TPVLGDPIDMERFREIGREGNGVLCYIEDCTNANKKGRTPSENVAREHLRDVLYSMEDYD
GGIVATTFSSHIARVKSLVEFANDIGRQPVLLGRSMEKYSGTAERLDFVDFPSDLGMFGH
RKSVDRTFKRIMNEGKEDFLPIVTGHQGEPRAMLTRMARGETPYQLDDGDKVVFSARVIP
EPTNEGQRYQAEKLLGMQGARVYDDIHVSGHMNQEGHYTMLNALQPQHIIPAHQDLKGLS
GYVNLCESEGYKMGRDIHVSRNGNLIQLVD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagaaattgcaacaatcggcggctacgaagaagttggacggcagatgactgcc
gtccgcgccggtgacgacgtcgtcatcttcgatatgggcctgaacctctcgcaggttctc
atccacgacaacgtcgaaaccgaacggatgcacagtctcgatctgatcgatatgggtgcg
atccccgacgatcggatcatgagcgacctcgagggcgacgttcaggcgatcgtcccgacg
cacggtcacctcgaccacatcggtgcgatctcgaaactcgcacaccgttacgacgcaccc
atcgtcgcgacgccgtttacgatcgaactcgtcaaacagcagatcgaaggcgagcagaaa
ttcggcgtcgagaacgacctgatcaagatggacgccggcgagacgatgtcgatcggcgac
tccggcaaggtcgacctcgagttcgtcaacgtcacgcactcgatcatcgacgcgatcaac
ccagtgttgcacacgccggaaggcgctgtcgtctacggactggacaagcgtatggaccac
acgccggtgctcggcgatccgatcgacatggagcgattccgcgagatcggtcgcgaaggc
aacggcgtcctctgttacatcgaggactgtacgaacgcgaacaagaagggccgcacgccc
tccgaaaacgtcgctcgcgaacacctccgtgacgttctctacagtatggaggactacgac
ggcggcatcgtcgcgacgacgttctcgagtcacatcgcacgcgtgaagtccttagttgag
ttcgcaaacgacatcggccgtcagccagtcttgctgggccgttcgatggagaagtactcg
ggaaccgcagaacgactcgacttcgtcgacttcccgtcggatcttgggatgttcggtcac
cggaaatccgtcgaccgcaccttcaaacgcatcatgaacgaaggcaaggaggacttccta
ccgatcgtgaccggtcaccagggagagcctcgagcgatgcttacgcggatggcccgcggc
gagacaccgtatcaactggacgacggcgacaaggtcgtcttctccgcacgtgtcattccg
gagccgacgaacgagggccagcgctaccaggccgagaaactcctgggtatgcagggcgct
cgcgtctacgacgacatccacgtctccgggcacatgaaccaggagggccactacacgatg
ctcaatgcgctgcagccacagcacatcatcccggctcaccaggatctcaagggcctctcg
gggtacgtcaacctctgtgagagcgaggggtacaagatgggccgagacatccacgtctcg
agaaatggcaacctcattcagctcgtcgattga
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