Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0029
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Entry
HDEF_0029 CDS
T00911
Symbol
rnb
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hde03016
]
HDEF_0029 (rnb)
Enzymes [BR:
hde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HDEF_0029 (rnb)
Transfer RNA biogenesis [BR:
hde03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HDEF_0029 (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ACQ66804
UniProt:
C4K844
LinkDB
All DBs
Position
26421..28352
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AA seq
643 aa
AA seq
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MFQNNPLLAKLKKQLHVSAPKIEGIVKGTEKGFGFLEIDAQKSYFIPPPQMKKVMHGDRV
QGSLYNDRDREMVQPETLLEPFLSRFVGRVQKRGTFLLIRPDHPLLKEAIPCYVSADIAH
SFEEGDWAVAEMREHPLKGARAFKAEITSFIAHGEDNFAPWWVTLTRHNLERTPPDMCPL
ALNETESEREDLTDLNFITIDNASTEDMDDALCVSDLGNGSFMLMVAIADPTAYIDENSP
LDTAARQRAFTTYLPGFDIPMLPREVADDICSLRPDQRRPALICRVTITPEGALGEDIRF
SSAWITSKAKLAYNKVSDWLENQGDWAPPNTEIAEQIQWLKHIYDVRHHWRQQHALVFKN
RSEYRFVINENGNVLDVIIDERRIAHGIVEECMIAANICAAVILRDCLGFGFYNVHRGFD
PALVKQAAQILKTHGIEFPPADLLTLEGFCQLRRQLDSLGNEALESRLRRLQAFSELSVE
PGPHFGLGLPLYASWTSPIRKYSDMVNHRLLKMVIANRSAKKLDENISELIAERRRANRM
AERDISDWLYARYLNPIAGTDKNFSAKIMEMTRGGLRVRLLENGAIAFIPASLIHSVRSE
IVFNSEMGTVYKNEDIIYRQGDMIEVQLAQVRLDTRNLIARPI
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaataatcctctacttgcaaagctaaaaaaacaacttcatgtttcagcgccc
aaaattgaaggtatcgttaaaggaaccgaaaaaggttttgggtttcttgaaatcgatgcg
caaaaaagttatttcattcctcctccacaaatgaaaaaggtcatgcatggcgatcgtgta
cagggcagcctgtataacgatagagatcgtgaaatggttcaaccggaaacgctgctggaa
cctttcctctcccgttttgtgggtcgtgtacaaaaaagagggacatttttgctgatcaga
ccagatcatcctttattaaaagaagctattccatgttatgtctctgctgatatcgcacac
tcttttgaagagggagattgggccgttgccgaaatgcgggagcatcctctgaagggtgct
cgagcttttaaagcagagatcacttcttttattgctcatggcgaagataatttcgcgcct
tggtgggtgaccttaactcgccacaatcttgaacgtactccgcctgatatgtgcccgttg
gcgctcaatgaaaccgaatctgaacgtgaagatttaacggatttaaattttattactatt
gataacgcctccactgaagatatggacgatgcactttgtgtgtcggatctgggcaatggc
tctttcatgctgatggtggctatcgcagacccaactgcctatattgatgaaaatagtcca
ttagatacggcggctcgtcagagggcttttacaacttatttgcccggctttgatatcccg
atgttgccacgcgaagttgcagatgatatctgttcacttcgccctgatcagcgtcgccct
gcattaatttgtcgtgtcaccattacgcctgagggcgctttaggtgaggatattcgtttt
tcgagcgcctggatcacctcaaaagcaaagctggcttataacaaagtatctgattggcta
gaaaatcaaggggattgggcgccgcccaatactgagattgctgaacaaattcaatggctg
aaacatatctacgacgtaagacatcattggcgtcagcaacatgctttggtctttaaaaat
cgttcagaatatcgttttgtgatcaatgaaaatgggaatgtacttgatgtcattattgac
gaaaggcgtattgctcacggtatagttgaagaatgtatgattgcggctaatatttgtgcc
gcggtgattttacgagattgtttaggttttggtttttataacgtacataggggctttgat
cctgctttggtaaaacaagccgcacaaatactcaaaacccatggtatcgaatttccccct
gctgatttactgacattagaaggtttctgtcaattacgtcgtcagttggattcgttaggc
aatgaagcgcttgaaagtcgcctgcgtcgtttacaggcattttctgaattgagtgttgag
ccaggcccacattttggtttgggtttgcccctgtatgcgagttggacttctccgattcgt
aaatacagtgatatggtcaatcaccggttgttaaagatggtgattgccaatcgatctgcg
aaaaagctcgatgaaaatatctctgaattaattgcagagcgtcgccgtgccaatcgaatg
gcagagcgagatatcagcgactggctctatgctcgttatctcaatcccatagcaggcact
gacaaaaatttttccgcaaaaattatggaaatgactcgtggtggccttcgagttcggttg
ttagagaacggagccatcgcttttattccggcttctttgattcactctgtccgtagtgag
attgtattcaattctgaaatggggacggtttacaagaatgaagatattatttatcgccag
ggagacatgattgaagttcaattagcgcaagtgcggttagatacccgaaatctgattgca
agacccatctga
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