Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0034
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Entry
HDEF_0034 CDS
T00911
Symbol
recC
Name
(GenBank) exonuclease V, gamma chain with recB and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HDEF_0034 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_0034 (recC)
Enzymes [BR:
hde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HDEF_0034 (recC)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HDEF_0034 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ACQ66809
UniProt:
C4K849
LinkDB
All DBs
Position
complement(35535..38906)
Genome browser
AA seq
1123 aa
AA seq
DB search
MFITYHSNQLDLLKTLTSTLIEKEPLKNPFQKEIILVQSPGMAQWLQIQLAQSLGISANI
QFPLPATFIWDMFTKVLKNIPKESPFNKDAMTWKLMCLLPDLLQNPIFASIKHYLQDDED
KQKIHQLAIRIADLFDQYLVYRSEWLDGWENGKKFDDLNKNQDWQAALWVSLIRYSRQLE
QPEWHRARLYQRFIQALNKNDVDSDLLPKRVFIFGISTLPPIYLKGLEALSRHMDIHFMF
NNPCRYFWGDIQNYDILAKLNIKNTSSDLRNIEEEQINPLLASWGRLGRDHLYLLSQIEG
LQEIHAFVDIEPDNLLHALQHDMLEFKNQATRHFSESNSHHNKKRLLDINDRSIGVHSCH
SQQREVEILQDQLLNLFSEDPALTPRDVIVMVADIDNYAPYIQAVFSNASLERYLPFAIS
DRKMTQVHPVLQTFIKLLDLPQSRFSSEQVLGLLEISALSQKFEIQEKELSLLREWVEGS
GIRWGLDNENVQDLSLPITGQHTWQFGLKRMFLGYAMDSQAGDWEGVLPYDESTGLAAEL
IGKLARLLMMLSIWRKKLKTSRLLSEWLPLCRDLFYAFFESNAETESIFILIDQQWQNII
QYGLSAQYANTVPVSLIRHDLVTRFENQRISQRFLAGPINFCTLMPMRSIPFKVVCLLGM
NEGIYPRILPPLGFDLMAKKRQKGDRSRRDDDRYLFLEALLSAQQYLYISYIGRSIQDNS
QRYPSVLVSELLEYIGNSYVLPGDENRNSDESMARVIQHLLFCHTRMPFSAKNFIKGTEQ
QSYAIEWLEAAKKHTQEQKQPQDDFIKPLVSEPFSEITLDELINFYRHPIKAFFQLRLGV
QFRVEQKELSNEEPFILAPLARYQFNTELLNALIEQKNVDQLYARMQASGRLPFGHFGEI
YWQQQKNEMGLIAKKIQTETGHTEFCRLEVNTTLGERTLSGWIAHAQTDGLIRWRPSTLT
IVDGLLLWIEHLAYCLSGGKGESRIYGKKESVWRFSALSQSEAEQHLSLFIEGYQKGMIQ
PLLLLNHSGWAWLTKCYDLKNRHILWDEKTQAKAKDHLLTVFQGNPKTGVRGEGDDPYIQ
RLFRSINDTHVDRILQEAKNYLLPIAHHNIIKNGVFNEKNSIT
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtttatcacttatcattccaatcaactggatttattaaaaacattaacaagcacattg
atagaaaaagaacctctaaaaaatccttttcaaaaagaaatcatattggtacaaagcccg
gggatggctcagtggttacaaattcaactcgcacaatctttaggcatttcagcaaatatt
cagtttcctcttcctgcgacctttatttgggatatgttcaccaaagttctaaaaaacatt
ccaaaagaaagcccttttaacaaagatgccatgacatggaaactgatgtgtttactgcct
gatttattacaaaatcctatatttgcatccataaaacattatctacaagacgacgaagat
aaacaaaaaattcatcaattggcgatacggattgccgatctgtttgatcaatatctggtt
tatcgctcagaatggttagacgggtgggaaaacggcaaaaaatttgacgacctcaataaa
aaccaagattggcaggccgctttatgggtctcattaatacgctactctcggcaacttgaa
caaccagaatggcatcgtgctcgcctatatcaaagatttatccaagccctaaataaaaat
gatgttgactctgatcttttacccaaaagggtctttattttcggtatctctaccttaccc
cccatttacttaaaaggtttagaagcattaagtagacacatggatatccatttcatgttt
aacaacccttgtcgttatttttggggcgatattcaaaactatgacattctggctaaatta
aacatcaaaaataccagcagtgatttacgcaatattgaggaagaacaaatcaacccctta
cttgcatcttgggggcgactaggcagagaccatctctatttattatctcaaatagaaggg
ctccaagaaattcacgcttttgttgacattgagccagataacttacttcatgcgctacaa
catgacatgttagagttcaaaaatcaggcgacccgtcacttttctgaatcaaactctcat
cacaacaaaaaacgtttactggatatcaacgatcgctctatcggtgttcattcttgtcac
agtcaacaaagagaagtggaaatcttacaggatcaacttctgaatttattttctgaggat
cctgctttgactcccagagatgtcattgtgatggtcgcagacatcgataattatgcgccc
tatatacaagccgtatttagcaatgcttctttagaacgctatctaccttttgctatttca
gacagaaaaatgacacaggttcatcctgtcttacagacttttataaaattgcttgattta
ccacaaagtcgattcagttctgaacaagtattgggattattggaaatttctgcgctatct
caaaaatttgagatccaggaaaaagagttatccctattacgtgaatgggtagaaggatca
ggcatacgttgggggctggataatgaaaacgtacaggacctctctttgccaatcacaggt
caacatacctggcaatttggtttaaaacgtatgttcttaggttatgccatggacagccaa
gcaggcgattgggaaggcgtattaccctacgatgaatccaccgggttggcggcagaatta
atagggaagttggctcgactgttaatgatgctaagcatatggcgcaaaaaattaaaaacc
tcacgcttattatcagaatggcttcctctctgtagagatttattttacgcattttttgaa
tccaatgctgaaacagaatctatcttcattctgatagatcaacagtggcaaaacattatt
cagtacgggctctcagcccagtacgccaatacagtgcctgtcagcttaatacggcatgac
ttggtgactcgttttgagaatcaacgcatcagccagcgttttttagcgggccccatcaat
ttttgcactctgatgccgatgcgttcgattccttttaaagtcgtctgtttactaggaatg
aatgaagggatttatccaagaatattgcctcctctgggtttcgatctgatggcaaaaaaa
agacaaaaaggggatcgtagccgtagagatgacgatcgatatcttttccttgaagcatta
ttatcagctcaacaatatctgtatatcagctacattgggcgttctattcaagataatagt
cagcgttacccgtcggtattagtcagtgaattgctcgaatatattggaaacagttatgtt
ttgccgggagatgagaatcgcaactctgacgaaagcatggccagggtaattcagcacctc
cttttttgtcatacacgaatgcctttttctgccaaaaattttattaaaggaacagaacaa
cagagttatgcgattgaatggcttgaggctgcaaaaaaacacacccaagagcaaaaacag
cctcaagatgattttattaaacccctagtctcagagcctttctcagaaatcactctagat
gaattaatcaacttttaccgacatcccatcaaagccttctttcaactacgcttaggcgta
cagtttagggtagagcaaaaagagttatcgaatgaagaaccttttatcctggctccttta
gcacgttatcaatttaatacagagcttttaaatgcgttaatagaacagaaaaatgttgat
cagctgtatgcaagaatgcaagcgtctgggcgtttaccttttggtcattttggtgaaatt
tattggcaacagcaaaaaaacgaaatggggttgatagcgaaaaaaattcagacagaaacc
gggcatacagaattttgtcgcctggaagtcaatacaactttgggtgagagaaccttgtct
ggctggatagcacatgctcaaacagatggattaatacgttggcgtcctagtacattgacc
atagttgatggcttgttactctggattgaacatttggcttactgtttatcaggaggtaaa
ggtgaaagccgtatttatggaaaaaaagagtcagtctggcgattttctgctttatcacaa
tccgaagcagagcaacatctcagcctattcattgagggatatcaaaaaggaatgattcaa
cctctactgttattaaatcacagtggatgggcatggttaacaaaatgttacgatttgaaa
aatcggcacattttatgggatgaaaaaacgcaagcaaaagcaaaagatcatttattaacc
gtatttcaaggtaatcctaaaacaggggttagaggagaaggagacgacccttacatacag
cgcctcttcagatcaatcaatgacactcatgtagaccgtattttacaggaagcaaaaaac
tatttattgccaatagcacatcacaacatcattaaaaatggagttttcaatgaaaaaaat
tcaatcacttga
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