Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0103
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Entry
HDEF_0103 CDS
T00911
Symbol
hrpA
Name
(GenBank) helicase, ATP-dependent
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hde03019
]
HDEF_0103 (hrpA)
Enzymes [BR:
hde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HDEF_0103 (hrpA)
Messenger RNA biogenesis [BR:
hde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HDEF_0103 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
NACHT
T2SSE
nSTAND_NTPase5
SLFN-g3_helicase
WHD_HA2
ResIII
ABC_tran
PhoH
STAT_linker
AAA_30
AAA_25
NTPase_1
Zeta_toxin
TsaE
SRP54
AAA_16
7TMR-HDED
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ACQ66878
UniProt:
C4K8P1
LinkDB
All DBs
Position
complement(103075..106803)
Genome browser
AA seq
1242 aa
AA seq
DB search
MNHPIFEYPQNLPITQQKQRICETIERHQVVIISGETGSGKTTQLPKICLELGRGGVTGM
IGHTQPRRLAAYRVAQRIADELKTPLGERVGYQMRFHQKINENTAIKLMTDGILLAEIQH
DRLLMRYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKIIITSATLDSQRFSDHFNQA
PMIEVSGRSYPVEVRYRPPQKTNESEGEGLQAMIDAVNELYRESTQGDILIFMSGEREIR
DATEVLRQENISHTEILPLYSRLSYAEQKKIFQSHVGRRIVLATNVAETSLTVPGIKYVI
DTGTARISRYSFRTKIQKLSLEPISQAAANQRKGRCGRISSGICIRLYEEQDFLSRPVFT
DPEISRTNLSAVILQMMAFNLGDITSFPFIDLPDKRRIQDGIALLSELGAIEHSPKPNLT
KIGRQLSRLTIDPRLGRMILAAQSRSCVQEVMIIAAALSIQDPRERPQDKKQAADEKHHR
FSDKDSDFVAFIHLWNYIEEQQNALSVNQFRQLCHREFLHYMRVREWQDIYSQLKKSAQK
LGLLTLSINHTEPHYFHVHTALLTGLLSHIGQKDMESHEFTGPRNIRFAIFPHSCLFKKP
PKWIMVSELLETRRLWGHIAARIEPEWLEPLAGHLLKRHYSAPHWEKNKGAVIAHEKVTL
FGLPIIYDRKINYGAIDPKLCRSLFIRQALVEGEWETTHAFFHQNLKLLSEAEELENKSR
RRDIVVDDHTLFEFYDQRIGQEVVSSRHFNHWWKKVFQTDPDLLNFDKSMLITENAQEIT
EEDFPDFWSQEAFKLDLSYQFEPGNETDGVTVHIPLVMLNQIQSQGFDWQVPGMRFELIT
ALLKSLPKKLRRHFVPVPNYAQAILESIRPSSGSFLSAIEKKLWQMSGVKITREDWQWHQ
VPEHLKITFRILDDQNQMIKEGKDLEVLRQELTRQFKKTRSTLIENCTFEKQNLKEWNFG
TVPLYYESTQENYSIKHYPALVDETHSVALRLFETKQQQKIMMWKGLRRLLLLNMASPAQ
ALRQKWFNKSKLGLYFNPYENIPALLEDCVACSVDKLMAEYGGLVWTQSEFLILKEKIRP
KVYEVSEKITREVQQILDKAFSIHKKLQAGCNLAQVPAFTDMKQQLEGLVCPYFISDNSL
KPLADILRYLKAIERRLEKLPSQLQTDRSNMAKIHALNDLWIKWKNQLTEWREKEKEIKE
VHWMLEELRVSLFAQQLGTAYPISEKRVLNAINKQINGQGQG
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatcctatctttgaatacccacaaaatttaccgattacacaacaaaaacaaaga
atctgcgaaactatcgagcgtcatcaggtcgtgattatctcgggtgaaacaggctctgga
aaaacaacccagctgcctaagatatgtttggaattagggcgtggcggtgttacagggatg
ataggtcatacgcaaccacgccgtttggccgcttatcgcgttgctcagcggattgccgat
gaactcaaaacgcctcttggtgaacgtgtgggttatcaaatgcgttttcatcaaaaaatc
aatgaaaacaccgcaataaaattgatgaccgacggcattttactggctgagattcaacat
gatcgtcttttgatgcgatatgacaccattattattgatgaagcccacgaacgcagcctg
aatattgattttattttgggatatctacggcaactccttcctaaaaggccagatttaaaa
atcatcattacctcggccactctagactcacagcgattttctgatcattttaatcaagca
ccgatgattgaagtgtcaggccggagttatcccgttgaagtgcgttatcgccccccccaa
aaaacaaatgaaagcgaaggagaagggcttcaagcaatgatagatgctgtgaatgagcta
tatcgagaatccactcagggcgatattttaatttttatgagtggagaacgagaaatccgt
gatgcaacagaggtgctgcgccaagaaaatatatctcacactgagatattacctttgtat
tcacgtttatcttatgctgagcaaaaaaaaatttttcaatcacatgtggggcgacgtatt
gttttggcgacgaatgtcgcggagacctctctcacggtgcctggtattaaatatgtgata
gatacgggaaccgctcgaatcagccgttatagttttcgtactaaaattcagaaattatcc
ttggagccgatatcccaggctgctgccaatcaacgcaaagggcgttgtggacgaatttcc
agcggaatttgcattcgactctatgaagaacaggattttttatcacgccctgtttttacc
gatccagaaatttcaagaacgaatctttcagccgtgatattacaaatgatggcttttaat
ttaggggatatcacttcttttccttttattgatcttcctgataaacgccggattcaagat
ggcatcgcgttattgtcagaacttggggcgattgagcattccccaaaacccaatctgaca
aaaataggccggcaattgtcacggttgaccattgacccgagattgggtcgaatgatttta
gcggctcaatctaggtcctgcgttcaggaagtgatgattattgcggcggcactttctatc
caggatccacgtgaaaggcctcaagataaaaaacaggcggccgatgaaaaacatcatcgt
ttttcggataaagactccgattttgtcgcttttattcatctatggaattatatcgaagaa
cagcagaacgctttatctgtcaatcaatttcgtcaattatgtcatcgagagtttctgcat
tatatgagagtgcgcgaatggcaggatatttactctcaactcaaaaaaagtgctcaaaaa
ttaggtctattgacattatccatcaatcacactgagccccattattttcatgttcatacg
gctcttttaacgggtttgttatctcatattggacaaaaagacatggaaagccatgaattt
acaggccctcgtaacatacgcttcgcgatttttccgcactcttgtttgtttaaaaaacca
cctaagtggattatggtctctgaattacttgaaactcgtcgactgtgggggcatatcgct
gcacgtattgaacctgagtggctagaacccttagcaggacatttgctcaaacgtcattac
agtgcacctcattgggaaaaaaacaaaggggcagtgattgcccatgaaaaagttaccttg
tttggactgccgattatttatgatcgaaaaatcaattatggcgcgattgatccaaaatta
tgcagatccttatttattcgacaagcactggttgagggggagtgggaaacgactcatgct
ttttttcaccaaaatttaaagctgttgtcagaagccgaagagttagaaaataaatcccga
cgcagggatattgtggtcgatgatcacacattatttgaattttatgatcaacggattggc
caggaagtggtctcttcacgccattttaatcattggtggaaaaaagtgtttcaaactgac
cctgatctactgaattttgataaatcaatgctgattacagaaaacgcacaggagatcact
gaagaagattttcctgatttttggagccaggaagcatttaaattagacctatcctatcaa
ttcgagccgggcaacgaaaccgatggggtcaccgttcatattccactcgtgatgttgaat
caaatacagtctcaaggttttgattggcaagtgccgggcatgcggtttgaactcatcaca
gccttgctcaaatccctgcctaaaaaactgagacgacattttgttcctgtgcccaattat
gcacaggccattttagagagtatccggccttcatcaggttcatttttaagtgccattgag
aaaaaattatggcagatgagcggagtcaaaataacaagagaagattggcagtggcatcaa
gtgcctgagcatcttaaaatcacttttcgcattttggatgatcaaaatcaaatgataaaa
gaaggaaaagatcttgaagttttacggcaagaactgacaagacagtttaaaaaaacgcgc
agtaccttgatagaaaactgcactttcgaaaaacagaatctcaaagaatggaattttggc
accgtgcctctttactatgaaagcactcaagaaaattattctattaaacattatcccgcg
ttggtggatgaaacccattctgttgcactgcgtttatttgaaacaaagcagcagcaaaaa
ataatgatgtggaagggactccgacgtctgcttttgctaaatatggcttctcctgctcag
gctttacgtcaaaaatggtttaataaatcaaaattagggctttattttaatccgtatgaa
aatataccggcattgctagaagattgtgtcgcctgctcggtagacaagctgatggctgaa
tatggtggtcttgtgtggacacaatctgaattcttgattttaaaagaaaagatacggccc
aaggtatatgaggtctcagaaaaaataacgagagaagttcaacaaatattggataaggct
ttttctattcacaaaaaattacaagcgggttgtaatctcgcacaagttcccgcttttact
gatatgaaacagcaattagaagggttggtttgtccttattttattagtgataacagctta
aagcctttggctgatattttgcgttatttgaaagcgattgaaagacggttggaaaaatta
ccctctcagttgcaaacagatcgatcgaatatggcaaaaatacacgcactgaacgatttg
tggataaaatggaaaaatcaattgacggaatggagagaaaaggaaaaagagataaaagaa
gtacattggatgctggaagagctgcgtgtcagcttattcgcacagcaactcggtactgca
taccctatttcagaaaaacgcgtattaaatgcgataaataaacaaataaacggccaaggc
caaggctaa
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integrated database retrieval system
