Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0121
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Entry
HDEF_0121 CDS
T00911
Symbol
mfd
Name
(GenBank) transcription-repair ATP-dependent coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HDEF_0121 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_0121 (mfd)
Enzymes [BR:
hde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HDEF_0121 (mfd)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HDEF_0121 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACQ66894
UniProt:
C4K8Q7
LinkDB
All DBs
Position
complement(123840..127295)
Genome browser
AA seq
1151 aa
AA seq
DB search
MISQKDRYKLPTAPSDVRQLGQLTGSACVLECAEIIERHLGLAILITPDRQTGLQLEYEL
QAFISHPISILPDWETLPYDHFSPHQSIISDRLACLYQLPSRDRGAIIIPINTFMQRICP
YSFLHRHAVFLKKNQRLSLDLLRVQLDKAGYRSVHQVMEHGEFAIRGGLLDLYPMGSEEP
YRIDFFDNEIESLRVFDVDTQRTLSEIEQINLLPAHEFPIDKTAIESFRSQWREQFEIRR
DPEHIYQQVSKNILPAGIEYWQPLFFNEPLDTLFDYLSADVLLMNIGDIQAAAEGFWKDI
HQRYEHRRIDPMRPLLAPDKLWLNVPELFSGLKAWPRIQLRTETLPNKSANTNLPYEPLP
ELAVQRSQKNPLMHLSDFIKRFKGIVVFSVETEGRQETLRDLLKPMEINPVLISSLDEAI
QHGHYLMPGAMERGFIDTQRLRAFICESDLLGERVNRRHQDNRRIINTDVLIRNLMELRS
GQPVVHLEHGVGRYLGLINLETGGIQAEYLILGYANEDKLYVPVSSLNVITRYSGSSDEN
APLHKLGGDAWTKACKKTLEKVRDVAAELLGIYSQRAAKPGFSFKKDSEQYQLFCESFPF
ETTPDQEQAIHAVLNDMSQPLAMDRLVCGDVGFGKTEVAMRAAFLAVINHKQVAVLVPTT
LLAQQHFDNFRDRFAHWPIQIEMLSRFRTAKEQKQILQQVAEGKLDILIGTHKLLKNDLC
WKDLGLLIVDEEHRFGVRHKERIKAIRTDVDILTLTATPIPRTLNMAMSGMRDLSIIATP
PARRLSVKTFVREYDSFLIKEAILREILRGGQVYYLYNEVETIEKTYETLKKLVPEARIT
LAHGQMRERDLERVMNDFHHQRFNLLVCTTIIETGIDIANANTIIIEKANHFGLAQLHQL
RGRVGRSHHQAYAYLLTPPPKAITNDAKKRLEVITSLEDLGSGFALATHDLEIRGAGELL
GENQSGQINAVGFSLYMEMLENAVEAFKKGKDPSLEAFIRPQSEIEMHLPTLLPENFIPD
VNIRLSFYKRIANANNHVELNELKIELIDRFGLLPDEVQYLLKTAYFRQKSEKLGIKRIE
SHEKGGFLTFRDDHQVNPAYLIGLLQKNSTIYRLEGSSKLKFILDLKNKNERLKFIEDLL
SSLEDHRLITA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgatctctcaaaaagaccgttataaattacccactgcgccttctgatgtaagacaatta
ggtcaattaacaggttctgcatgtgtgttagagtgtgctgaaatcattgagcgtcatttg
gggctcgccatcctgataaccccagataggcaaactgggctgcagttagaatatgaactt
caagcatttatctctcatcccatttccattttgcctgattgggaaactttgccctacgat
catttttcccctcatcaatcgattatttctgatcggttagcttgtttatatcagctgcca
agtcgagatcgtggcgcgattattattcccataaacacttttatgcagcgaatttgtcct
tattcttttttgcatcgtcacgccgtgtttttaaaaaaaaaccaacgtttgtcccttgat
ctattgcgtgttcaactcgataaggcaggttatcgttctgtacatcaggtgatggaacat
ggtgaatttgctattcgtggcggattgctcgatttatatcctatggggagtgaagaaccc
tatcgaattgatttttttgataatgaaatagagagtttgagagtgttcgacgtcgataca
cagcgcactttatctgaaattgaacaaattaatttgttgcctgctcatgagtttcctatt
gataaaacagccattgaatcgtttcgtagtcagtggcgagagcaatttgagatacgtcgt
gatccagaacatatctaccaacaagtcagcaaaaatattttgcctgcaggcattgaatat
tggcagccgcttttttttaatgagcccctggatactttatttgattatttatccgctgat
gttttgttgatgaatataggtgatatacaggccgcagcggaaggtttttggaaagatatt
catcaacgttatgagcatcgacgcattgatcccatgcgcccgttattggcgcctgataaa
ttatggttaaatgtaccagagctttttagcggactaaaagcctggcctcgtattcaatta
agaactgagacgctacctaataaatccgcaaataccaatttaccttatgagccattgcca
gagctggctgtgcaacgatcgcaaaaaaatcctttgatgcatttatctgattttataaaa
cgctttaagggcattgtggtgttttcagtggaaactgaaggccgtcaagaaacactccga
gatctcttaaagccgatggaaatcaatccagttttgatttcttcattagatgaagccatt
caacatgggcattatttgatgccaggagccatggaacgcggttttatcgatactcagcgg
cttcgggcttttatttgtgaaagtgatttgttgggtgagcgagttaatcgtaggcaccaa
gacaatcgacggatcattaatacggatgttttaatacgtaacttgatggagcttcgctct
ggccagcctgttgtacacctcgaacacggagtgggtcgttatcttggcctgataaactta
gaaacaggtggtattcaagccgaatatttaattttaggttatgcgaatgaagataaactt
tatgttccggtttcttctttaaatgtcatcacgcgttattcaggttcttcagacgaaaat
gcgcctttacataaattaggaggggatgcctggacaaaagcatgtaaaaaaacactcgaa
aaagtacgggatgtggccgcagagcttttaggtatttattctcagcgagccgcaaaaccc
gggttttcatttaagaaagactctgaacaatatcagttgttttgcgaaagctttcctttt
gagaccaccccagatcaagaacaggctattcatgctgtattaaatgatatgtctcagcca
ttagcgatggatagacttgtttgtggagatgtcggttttggaaaaacggaagtggcgatg
agagccgcttttttagcggtcatcaatcataaacaagtagccgttttagtgccaaccact
ttgcttgctcagcaacattttgataattttcgcgatcgttttgctcattggccgattcaa
atagaaatgctttcacggtttcgaaccgccaaagaacaaaaacagatcttgcaacaagtg
gcggaaggaaagttagatatccttataggaacgcataaattgttgaaaaatgatttgtgc
tggaaagatctgggtttgttgatcgtagatgaggagcatcgttttggtgtacgccataaa
gagcgaataaaagcaatccgaacagatgttgatatcttgaccctaacggcaacgccgatt
cctcgtacactgaatatggcaatgagtggcatgcgagatttatctattattgctactcct
cctgctcggcgtctttccgtaaaaacgtttgtaagagaatatgactcgtttctaatcaag
gaagcgatattgcgtgaaattttaagaggcggtcaagtttactatctttataatgaggtt
gaaaccattgaaaaaacttatgaaaccttaaaaaaattggtgcctgaagcacgaattacc
ttggctcacggacaaatgcgagaacgggatctagaacgtgtgatgaacgattttcatcat
cagcgcttcaacctgttggtttgtaccacgattattgagaccggtatcgatattgcaaat
gcgaataccattattatcgaaaaagcaaaccattttggtcttgcacaacttcatcaattg
cgtggtcgagttgggcgttcccatcatcaggcttatgcttatttactgacgcctccccca
aaggccataacaaatgatgcaaaaaaacgtttggaggtcattacctcgttagaagattta
ggttctggatttgctttggccacccacgatcttgaaattcgtggtgctggagaattattg
ggagaaaaccaaagtggtcaaataaatgcagtggggttttctctttatatggaaatgcta
gaaaatgcagtagaggcttttaaaaaaggcaaagatccttcattggaagcatttattcgt
cctcaatctgaaattgaaatgcaccttccaacgctcctgcctgaaaattttattcctgat
gttaatattcgtttgtctttttataaaagaattgcaaatgcgaataatcatgttgaatta
aatgagctcaagattgaattgattgatcgttttggtttactgccagatgaagtgcagtat
ctcttaaaaacggcttatttccgacagaaatcagaaaaattaggcattaagcgaattgaa
agtcatgaaaaaggaggatttttaacttttagagacgatcatcaagtcaatcctgcttat
ttaattggtttattacaaaaaaactcaacaatttatcgtttagaaggctccagcaaattg
aaatttattctcgacttaaagaataaaaacgagcgtcttaaatttattgaagatctgtta
tcatctttagaagatcatagattgataacagcttga
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