Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0209
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Entry
HDEF_0209 CDS
T00911
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03030
DNA replication
hde03430
Mismatch repair
hde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HDEF_0209 (dnaE)
03430 Mismatch repair
HDEF_0209 (dnaE)
03440 Homologous recombination
HDEF_0209 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hde03032
]
HDEF_0209 (dnaE)
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_0209 (dnaE)
Enzymes [BR:
hde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HDEF_0209 (dnaE)
DNA replication proteins [BR:
hde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HDEF_0209 (dnaE)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HDEF_0209 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ACQ66977
UniProt:
C4K334
LinkDB
All DBs
Position
complement(213069..216551)
Genome browser
AA seq
1160 aa
AA seq
DB search
MTDPRFIHLSVHSDYSMIDGLTKIKPLVQKAAALGMPALALTDFSNFCGLVKFYGAAHKV
GIKPIIGADFYVQNPALENNFARLTLLARNQEGYHNITLLISAAYQRGYGSLGPVIDRHW
LIKHKEGLILLSGAKMGDLGQFILRENQSQIDQCLHFYQTHFPDNYYIELTRTGRADEES
YLHSAINIAEKHGIPVVATNHVRFMDPSDFDAHEIRVAINAGFTLADPKRPQNYSPQQFM
RSEQDMCELFSDIPEALTNSVEIAKRCNLNLRLGEYFFPKYPTGKMSTEDFLIARSQEGL
GKRLEFLFSDPEIRKQKREAYDQRLALELQVINEMGFPGYFLIVMEFIQWAKDNHIPVGP
GRGSGAGSLVAYALQITDIDPLEFDLLFERFLNPERISLPDFDVDFCMEKRDAVIEHVAD
MYGRESVSQIITFGTMAAKAVIRDVGRVLGHPYSFVDRIAKLIPLDLGMTLEKAFVAEPE
LTKAYEADEEVRSLLDMARKLEGVTRNAGKHAGGVVIAPTKMTDFAPLYCDSQGQNPVTQ
FDKNDIEYVGLVKFDFLGLRTLTVIHKAVEMINQRIITQGAQPIDISLIPLNDPKSFEVL
QRSETTAIFQLESKGMKDLIKRLKPDCFEDIIALVALFRPGPLQSGMVDNFIDRKQGRET
ISYPDIEWQHPCLQPVLEPTYGIILYQEQVMQIAQVLSGYSLGEADILRRAMGKKDPVEM
AKQRSIFENGAKEKGIDGQLAIKIFDLVEKFAGYGFNKSHSAAYALLSYQTLWLKTHYPA
EFMAAVMTADMDNTDKIVGLVDECARMGLTMLPPDINSGFYHFHVNAQGKIVYGMGAIKG
VGEGAIESILEARRQGGEFKDLFDFCARTAKKKLNRRILEKLIFSGALDRLGPHRAALMH
ALQNAIKAAEQHAKAELTGQADMFGVLTQDPKKIEQSYAQVPPWQQQTVLDGERETLGLY
LTGHPITQYLKEIRHYVGSSRLQDLSPTPRGKNVTVAGFVVSAKVMTTKRGARIGLCKLD
DRSAHLDIMLFNDAFEKYQHLLQKDLILIARGQISFDDFNNGLKMTAHELMDISEAREKH
VRALAISVSHTQVNKVFFDKLRDILEPCRSGSVKIHFYYQGKNASAKLRFGTDWHITPTN
RLLIDLRNLIGHQQVQLEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcctcgttttatacatttgagtgtgcacagcgattactccatgatagatgga
ttaaccaagattaagcctttggtgcaaaaagcagcagcgttaggtatgcctgcactcgcc
ctcaccgattttagtaatttttgtggtttggttaaattttatggggctgcccataaagta
ggcattaaacctattattggtgcggatttttatgttcaaaaccctgccctggagaataat
tttgctcgtctcaccctattggctcgcaatcaagagggttatcacaatatcacgctgtta
atatctgcggcctatcaacgaggatatggctctctcgggccggtgattgatcgccattgg
cttatcaaacacaaagaagggctcattctgctttcaggagcaaaaatgggcgatctcggg
caattcattctcagagaaaatcaaagtcagatagatcaatgcctccatttttatcaaaca
catttccctgacaactattatattgagctgacccgtaccgggcgcgcagacgaagaatct
tatcttcattctgcgatcaacattgcagaaaaacatggcatacctgttgtcgctacgaat
catgttcgttttatggatccctctgatttcgatgcacatgaaattcgagtggctattaat
gcgggttttactttagctgatcccaaacgcccgcaaaattatagcccacaacaatttatg
cgttctgaacaagacatgtgtgaactgttttcagatatccccgaagctttaacaaacagt
gttgaaatcgcaaaacgctgtaatctgaatcttcgtttaggggaatattttttcccaaaa
tacccgacaggaaagatgagcacagaggattttttgatcgcgcgatctcaagaagggctg
ggaaaacgcctggaatttcttttctctgatcctgaaatacgcaaacaaaaacgcgaggcc
tacgatcagcgtttagcgttggaacttcaagtgatcaatgaaatgggcttccctggctat
tttttgattgtgatggaatttattcaatgggcgaaagacaatcacattcccgttggccca
ggtcgaggctctggagctggctctttagtggcctatgcgcttcaaatcacagatattgat
ccccttgaattcgatttgctttttgaacgttttttaaatcctgaacgtatttctttgcct
gattttgatgtggatttttgcatggaaaaacgggatgcggtgatagaacatgtcgcggac
atgtacgggcgagaatccgtttcacagatcatcactttcggtaccatggctgccaaagcg
gtaatacgtgatgtggggcgagtgctcggccatccgtacagtttcgttgacaggatcgca
aaattaatccccttggatctcgggatgacattagaaaaagcgtttgtggcagagcctgaa
ttaacgaaagcctatgaagccgatgaagaagttcgaagtttgctggatatggcgcgtaag
ctggaaggggtcactcgtaatgcgggtaaacacgcaggaggcgtggtgatcgcaccgaca
aaaatgactgattttgcccctttatattgcgattctcaaggccaaaacccggtgacgcaa
tttgataaaaatgacatcgaatatgtgggattggtgaagttcgattttctcggtttacgt
actttgaccgtgatccacaaagccgttgagatgatcaatcaacgcatcatcactcaaggc
gcacagcctattgatatctctttgattccgctcaacgatccgaaaagctttgaggtgcta
cagcgatctgaaacgaccgccatctttcagcttgaatccaaaggcatgaaggatttaatc
aaacgcttaaagcctgactgttttgaggacatcatcgcgctggtcgctttatttcgtccg
ggcccattacaatcgggcatggtggataattttattgatcgcaaacaggggcgtgaaacc
atttcttatcctgatattgagtggcaacatccttgcttacagcccgtattagaacccacg
tacggcattattttatatcaagagcaagtcatgcaaattgctcaggtgctttcaggttat
tctctaggggaagcggatatactcaggcgtgccatgggcaaaaaagaccctgttgagatg
gcaaaacagcgatctatttttgaaaatggggccaaagaaaaagggattgatggtcagttg
gccattaaaatttttgatttggttgaaaaatttgccggctatgggtttaacaaatcacat
tctgctgcttatgctttattgtcatatcaaacactgtggctcaaaacacattatccggct
gaatttatggccgccgtgatgacggcagatatggataacaccgataaaatagtagggctg
gtggatgaatgcgcccgcatggggcttacaatgttaccgccagacatcaacagtggattt
tatcactttcatgtgaacgctcaggggaaaattgtctacgggatgggcgccattaaaggg
gtcggagaaggggcaatagaaagtatcttagaagcacgtcgccaaggaggggagtttaaa
gatttgtttgatttctgcgcgcggacagccaaaaaaaaattaaatcgccggatattggaa
aaattaattttctctggggcgctggatagattaggcccacatagagcggcattaatgcac
gccttacagaacgcaatcaaagccgcagaacaacatgctaaagccgaattgactgggcaa
gcagacatgtttggtgtgcttacccaggatccaaaaaaaatagagcaatcctacgcacaa
gtgccgccatggcaacagcaaacggttctggatggagaacgtgaaaccttagggctctac
ttaacggggcatcctattactcagtatttaaaagaaattcgtcactatgtagggtcaagc
cgcttacaggatctttcccccactccaaggggtaaaaatgtcactgtggcaggatttgtg
gtctcagcaaaggtgatgaccacaaaacgaggtgcgcgaattggtctctgtaagcttgat
gatcgttctgcacatttggatatcatgttgtttaatgatgcattcgaaaaatatcagcat
ttattgcaaaaagaccttattctaattgccagaggccagatcagttttgatgattttaac
aatggactaaaaatgaccgcccacgaactgatggacatcagtgaagcccgtgaaaaacac
gtccgggcgcttgcgatttcagtcagccatacacaggtaaataaagtattttttgataaa
cttcgtgacattttagagccctgtcgttcaggaagtgtcaaaatacatttttattatcaa
ggcaaaaatgcctctgctaaattacgttttggtactgattggcatatcacaccgaccaac
cgcttattgattgatttacgtaatttgatcggtcatcagcaggtacaactagaatttgac
taa
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