Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0325
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Entry
HDEF_0325 CDS
T00911
Symbol
deaD
Name
(GenBank) cold-shock DeaD box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDEF_0325 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hde03019
]
HDEF_0325 (deaD)
03009 Ribosome biogenesis [BR:
hde03009
]
HDEF_0325 (deaD)
Enzymes [BR:
hde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HDEF_0325 (deaD)
Messenger RNA biogenesis [BR:
hde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HDEF_0325 (deaD)
Ribosome biogenesis [BR:
hde03009
]
Prokaryotic type
rRNA helicases
HDEF_0325 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ACQ67087
UniProt:
C4K3E4
LinkDB
All DBs
Position
complement(335124..336920)
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AA seq
598 aa
AA seq
DB search
MTIELPISFSKLGLSPSILSALTDLGYEKPSPIQLECIPHLLNGSDVLGMAQTGSGKTAA
FGLPLLQNIKPDIKAPQILVLAPTRELAVQVAQALTNFSKYMKGINVLALYGGQPYHVQL
KALRQGPQIVVGTPGRLLDHLKRGTLNLSSLTGLVLDEADEMLRMGFIEDVENILAKIPA
EHQTALFSATMPDAIRRITRRFMKEPKEVRIHSNVTTKPDINQSYWPVFGMRKNQALVRF
LEVEDFDAAIIFVRTKNATLEVAEALEDSGYNSAALNGDMNQSLREQTLERLKDGRLDIL
IATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLKN
IERVIKQPIPEIQLPKAELLSQRRLEKFAATVRQHIESSDLEMYKTLLKKLRPEEPFDLE
MIAAALLKMAQSERPLILPPDPVRSARRECHEREVRSTHRRRDYRDSSERPSYRERRDIG
EMQLYRIEVGRNDGVEIRHIVGAIANEGDISSRYIGNISLFPSHSTIELPKEMHKNIVSH
CTRTHILNKPINIKLLGDCPEERRERRPSSERRSTRSLSDQNRPYDAQHRRSFAGVAR
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgacgattgagttacctatctctttttctaaattggggctgtccccatctattctttct
gctcttactgatttaggatacgaaaaaccttctcctatccaattggaatgcattccgcat
ctgctaaacggttctgatgtgctcggaatggcacaaaccggaagcggaaaaacagcggct
tttggtttacctcttttacagaatattaaacctgatatcaaagcccctcaaattctggtg
ttagcacccacccgtgaactcgctgttcaagttgctcaagcattaaccaatttttccaag
tatatgaaaggcattaacgtattagcactttatggggggcaaccgtatcacgttcaatta
aaagctttacgtcaaggaccacagattgtggtgggtaccccagggcgtttattagatcac
ctaaaacgaggcactttgaatttatcttcgttgacaggtctggtattggatgaagctgat
gaaatgctgcgtatgggatttatagaagatgtggaaaacatcctggctaaaatccccgcc
gaacatcaaacagcacttttctctgcgactatgccagacgccattcgccgcattactcgc
cgtttcatgaaagagccaaaagaagttcgcattcattctaatgtcaccactaaacctgat
atcaatcaaagttactggcctgtgtttggtatgcgtaaaaatcaagctttagttcgtttt
ttagaagtagaagattttgatgctgctattatttttgtacgaacaaaaaacgctacactg
gaagtcgcagaagcattggaagacagtggttataacagtgcggcgttaaacggtgatatg
aaccaatctttacgtgaacaaactttagagcgattaaaagatggtcgtttagatatttta
attgctactgatgtagccgcaagaggcttggacgttgatcgtattagtcttgttgttaat
tatgatattcccatggattctgagtcttatgttcaccgtattggtcgtacaggaagagcc
ggtagggcggggcgggccttgttatttgttgaaaatcgcgagcgccgtttattaaaaaat
attgaacgtgttataaaacagcctattccggagattcagttacccaaggcagaattactc
agccaacgtcgattagaaaaatttgccgctacagtcagacaacacattgaaagcagtgat
ttggaaatgtataaaactttgctgaaaaaattacggccagaagaaccatttgatttagaa
atgattgcagccgctttgctaaaaatggcccagagtgagcgtccgttaattttaccgcca
gatcctgttcgttcagcgcgtcgcgaatgtcatgaaagagaggtccgttcaactcatcgc
cggcgtgattatcgtgactcgtctgaacgcccttcttaccgagaacgacgcgatattgga
gaaatgcaactgtatcgtatcgaagtgggtcgtaatgatggtgtagagattcgtcacata
gtgggggccattgcaaatgaaggtgatatcagcagccgttatattggcaacatcagcttg
tttccctcccattcgaccatcgagctgccaaaagaaatgcacaaaaacattgtgtctcat
tgcactcgtacacatattctcaataagcctatcaatattaaacttttaggtgattgtccg
gaggagcgacgggaacgtcgcccatcatcagagaggcgatcaactcgttcactcagcgat
caaaatcgtccgtatgatgctcagcatcgtcgttcattcgcaggagtggctcgttaa
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