Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0327
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Entry
HDEF_0327 CDS
T00911
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDEF_0327 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hde03019
]
HDEF_0327 (pnp)
03016 Transfer RNA biogenesis [BR:
hde03016
]
HDEF_0327 (pnp)
Enzymes [BR:
hde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HDEF_0327 (pnp)
Messenger RNA biogenesis [BR:
hde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HDEF_0327 (pnp)
Transfer RNA biogenesis [BR:
hde03016
]
Prokaryotic type
tRNA degradation factors
HDEF_0327 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
OB_RRP5_4th
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ACQ67089
UniProt:
C4K3E6
LinkDB
All DBs
Position
complement(337424..339574)
Genome browser
AA seq
716 aa
AA seq
DB search
MFTPTICRFDYGQLKVTIETGMMARQATAAVMVIIEGTAVLVTVVAQKEAKPGQTFFPLS
VHYQERSYAVGRIPSNFFRRETRPNEGETLTSRLIDRPIRPLFPKDFLNEVQVIATVVSV
NPKVNPDIVAMIGASAVLSLSGIPFHEPIGAARVGFINGAYVLNPTPEELKQSDLNLVVA
GTKNAVLMVESEANILTEEQMLGAIIFGHEQQQIVIESINDLVKKAGKLKWPFTPKIVDE
KLRSCITEEDKKDLSNAYLITDKQERYAKLNEIKTNIIERILKENETVNAEQIQDILYNF
EKNLVRQRILKDEPRIDGRDKDMIRALHACTGILPRTHGSALFTRGETQALVTTTLGTSR
DLQTIDDLMGERSDSFLFHYNFPPYSVGETGMLGSPKRREIGHARLAKRALMAVMPNIEE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEEDKFVVLSD
ILGDEDHLGDMDFKVAGTSEGITALQMDMKIQGITPEIMQSALHHAKAARLHILSVMNQV
ISSASSTISQYAPHIYNIKINPEKIKDVIGKGGAVIRALSDETDTKIDISDDGNITIAAL
SQKSAAFAQQRIEEITANIEVGRIYQGTVTRIADYGAFVSIASAKEGLVHISQIAEGRVE
KVTDHLKLKQQVSVKVLEIDRQGRIRLSIKDAIADTSEHKIEDTPVDSSFEESQKQ
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
ttgttcactccgactatctgtagatttgattacgggcagctcaaagtcaccatagaaacg
ggcatgatggcccgccaggctacggccgctgtaatggtaatcattgaaggtactgccgtt
ttggttactgtcgtcgcccaaaaagaggccaaacctggacaaacatttttccctttaagc
gtacattatcaagaacgtagctatgctgttggccgtattcccagtaatttttttcgacgt
gaaactcgcccaaacgaaggggaaactttaacttctcgtttaattgatcgccctatcaga
cctctatttcctaaagattttttaaatgaagtacaggtcatagcgactgtcgtttctgtg
aatccgaaggtgaatccagatatcgttgccatgataggcgcctctgctgtattaagctta
tccggtatcccatttcatgagcctataggcgctgcccgggttggatttatcaatggtgct
tatgtgcttaatcccactcctgaagagttaaaacaaagtgatttaaatttagtggttgcc
ggtacaaaaaacgcagtcttaatggttgaatcagaagccaatattttaactgaagagcaa
atgttaggcgctattatttttggtcatgagcagcagcagatcgtcattgaaagcatcaat
gatctggtgaaaaaggcaggtaaattaaaatggccttttacacctaaaattgtggatgaa
aaattgagatcctgtattacagaagaagataaaaaagatttaagcaacgcttatcttatt
accgataaacaagaacgttacgctaaattgaatgagataaaaacaaatattattgaaagg
attttaaaagaaaacgaaactgtaaatgcggagcaaattcaagatattctttacaatttt
gagaaaaatctcgtgcggcaacgtatcttaaaagacgagcctcgtattgatggtcgtgat
aaggatatgattcgggctttacacgcttgtacaggtattttaccccgtacacacgggtcg
gcattatttactcgtggtgaaactcaagcattggtcacaacgactttgggtacctcgcgt
gatcttcaaacaatagatgatctgatgggcgaacgctcagattcttttctatttcattat
aatttcccgccttattctgtgggagaaacaggcatgcttggctcacctaaacgacgtgaa
atcggtcatgctcgtttagcaaaaagagcattgatggctgtgatgccgaatatagaagag
tttccttacactgttcgggtggtttcagaaattacagaatcgaacggttcttcttcgatg
gcctcggtctgtggtgcttctcttgcccttatggatgcaggtgtgcctatcaaatctgcc
gttgcaggtatagccatggggctcgtcaaagaagaggataaatttgtcgtgttatctgat
attttaggcgatgaagatcatctcggtgatatggattttaaagtagcagggacttctgaa
ggcattactgcattgcaaatggatatgaaaattcaaggtattacacctgaaattatgcaa
tctgctttgcatcacgcaaaagcggcacgtttacatattttgagtgtgatgaatcaggtc
attagttcagcgagttctaccatctctcagtatgcccctcatatctacaatataaaaatc
aatcctgaaaaaattaaagatgttatcggtaaagggggagcggtgatccgtgcgctatct
gatgaaacggataccaagattgacatttcagatgatggcaatattactattgctgcgtta
agtcaaaaaagtgctgcctttgctcaacaacgcatcgaagaaattacagccaatattgaa
gtggggcgcatttatcaaggaacggtaacccggattgcagattatggtgcttttgtttcg
attgcctctgctaaagaagggttggttcatatttcgcagatcgctgaaggtagggtagaa
aaagtaacagatcatttaaaattaaagcaacaggtatcagtcaaagttttagagattgat
cgccaaggccgtattcgtttaagcatcaaagatgctatagcggatacttctgaacataaa
atagaagatactcctgttgattcctctttcgaagaatcgcagaaacagtaa
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