Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0329
Help
Entry
HDEF_0329 CDS
T00911
Symbol
truB
Name
(GenBank) tRNA pseudouridine 5S synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hde03016
]
HDEF_0329 (truB)
Enzymes [BR:
hde01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
HDEF_0329 (truB)
Transfer RNA biogenesis [BR:
hde03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HDEF_0329 (truB)
Prokaryotic type
HDEF_0329 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
CATSPERG_beta-prop
Motif
Other DBs
NCBI-ProteinID:
ACQ67091
UniProt:
C4K3E8
LinkDB
All DBs
Position
complement(340251..341192)
Genome browser
AA seq
313 aa
AA seq
DB search
MKSKRRHSGRDVNGILLLDKPKNFSSNQVLQKVKSLFAARRAGHTGALDPLATGMLPICL
GEATKFSPFLLNADKRYRVTAYLGHKTETSDAEGSVINKREITFTQPQLEEALEKFRGPI
LQIPSMYSALKHQGRPLYEYARQGVTLDREARRITVFDLQCLRWEGHELELEIHCSKGTY
IRTIVDDLGEVLGCGAYVSDLRRLQVADYTHDSMVTLEKLEELTLKNNTLGSAIDLLLLP
IESTALHLPEVNLESGAAACIKQGQPVSFFDNPTDTMVRLTEGGERHFIGIGIIDAHGRI
APKRLLRNVSDAL
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgaaatctaaacgccgacactccggtcgtgatgttaatgggattttattattagataag
cccaaaaatttttcctcaaatcaagttttacaaaaagtgaaatctctctttgctgcccgt
cgtgcagggcatacaggtgcattagaccctttagcaacaggcatgttgccgatttgcctc
ggtgaggccactaaattttcgccatttttgcttaatgcggataaacgctatcgagtgact
gcttatctgggtcataaaacagaaacctctgatgctgaaggcagcgttattaacaaacga
gaaatcacatttacgcaacctcagttagaagaagccctggaaaaatttagggggcctatt
ttacaaataccttctatgtattctgcattaaaacatcaaggaagacctctatatgaatat
gcacgtcaaggagtgacattagatcgtgaagctcggcgcattaccgtatttgatttacaa
tgtcttcgttgggaggggcatgaactagaacttgaaattcactgttccaagggcacctat
attagaacaatagtagatgatttaggcgaagtattgggctgcggtgcttatgtcagcgat
cttcgtcgtttacaggtagcagattacacgcatgactccatggtgacattagaaaaactc
gaagaactgacattgaaaaataatactttaggctctgcaatagatttattgctattgccg
attgagagcactgctttacaccttccagaagttaacttagaatctggcgctgctgcttgt
attaaacaaggtcagcctgtttcattttttgacaatcctaccgacaccatggtacgcctc
actgaaggtggtgagcgtcattttattggtattggtattattgatgctcatggccgaatc
gcgccaaaacgtttattaagaaatgtttcagatgctttataa
DBGET
integrated database retrieval system
