Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0352
Help
Entry
HDEF_0352 CDS
T00911
Symbol
rne
Name
(GenBank) RNase E: endoribonuclease for rRNA processing and mRNA degradation
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDEF_0352 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hde03019
]
HDEF_0352 (rne)
03009 Ribosome biogenesis [BR:
hde03009
]
HDEF_0352 (rne)
Enzymes [BR:
hde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HDEF_0352 (rne)
Messenger RNA biogenesis [BR:
hde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HDEF_0352 (rne)
Ribosome biogenesis [BR:
hde03009
]
Prokaryotic type
rRNA processing factors
HDEF_0352 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACQ67111
UniProt:
C4K3G8
LinkDB
All DBs
Position
359335..362190
Genome browser
AA seq
951 aa
AA seq
DB search
MKRMLINATQHEELRVALVDGQKLYDLDIESLGYEQKKANIYKGKITRIEPSLEAAFVDY
GSARQGFLPLKEISPEYFSPNYSNHGARPNIKDVLSESQELIVQIDKEERGTKGAALTTF
ISLAGSYLVLMPNNPGAGGISRRIEGDDRAELKKAMASLELPEGMGLIVRTAGLGKSSEA
LQWDLSLRLKHWDAIKKIAENRKAPFLIHQESNVVVRAFRDYLRPDISEILIDNPKVLEL
AKDHITALGRPDFSNKIKLYTGEVSLFSHYQIESQIESAFKREVRLLSGGSIVIDTSEAL
IAIDINSARATSGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMGPIRHQREV
ENRLREALRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL
ALSILRLIEEEALKENTHEVHAIVPVEVASYLLNEKRDAVNAIEKRQEGVRAVIVPNAQM
QTPHYTVLRVRKGEESLTLSYMLPQRYETEMPQTQDDPSNGRKHCEEPALSSLSFPIKST
DISNKNGAHGLNNARPERSFFQTLITVIQRLLGWIKKKETHGLESKNTAAQPQENAYVNR
KTDTRKERSPREPREDLGRNKLSRSQTATRDKTKNKNNRIQLEEDENVQANKPQAAERPR
RRQQDRRTNTPHPQIIEQEAKSLIEPLLTQEEEVPHKETPKKIPPRRSQRALTQKIRLNQ
TSHLTNAVDITIRDQTPHETPVMIEEQQNAPPIPEEATGLTEKANETMAEEVEKHMAPTS
VNENSTFPRRSRRSPRHLRVSAQKRRRYRDDPDTVQCTMPLKSAVDSPEFAFGKICLSAF
SEQMINPDILFNDDVHLKEKKQERQEDKQEKSASVEYVENSKNEQIAATESEKKQVFAPV
TKVFVIDQAVSFPTNWRWQPSSFISEDSTPAGTQNAIHHASVPAGRPEEVK
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaatgccactcagcatgaagaattgagagttgcactcgtagat
ggacaaaaattgtatgatttagatattgaaagcctgggttatgaacaaaaaaaggccaat
atttacaaaggcaaaattactcgaattgagcctagcttagaagccgcttttgttgattat
ggttctgcaagacaaggtttccttccattaaaagaaatttcacctgaatatttttcaccg
aattattccaatcatggcgctcgccctaatatcaaggatgtgttatctgaatcccaagaa
ctgattgttcaaatagataaagaagagcgcggcacaaaaggggcggcattaacgactttt
attagcttggcgggaagttatctggtcttgatgccgaataatcctggagccggagggatt
tcccgacgtattgaaggcgatgatcgagcggagttaaaaaaggcgatggcctctttagag
ctaccagaaggtatgggtttaattgtccgtactgcgggtttaggtaaatcctctgaagca
ttgcaatgggatttgtcattacgacttaaacattgggatgcaataaaaaaaatagcagaa
aatcgcaaggcaccttttttaattcatcaggaaagtaacgtggtcgttcgtgctttccgt
gattatttacgccctgatatcagtgaaattttgattgataatcccaaagtgcttgagctc
gcaaaagatcacatcacagcgcttggacggcctgatttcagcaataaaatcaaactttat
acaggtgaagtctcgttattcagccattatcaaattgaatcacaaattgaatctgctttt
aaacgcgaagtacgtttgctgtctggcggctctatcgtgatcgataccagtgaagctctg
attgcaattgatatcaattcggcccgggcgaccagcggtggggacatcgaagaaaccgcg
ttgaacacaaatttagaggccgctgatgaaatagcgcgccaacttcgtttaagggattta
ggtgggctgattgtcatcgactttatcgatatgggccctattcggcatcaacgtgaggta
gaaaatcgcttacgtgaagccttgcgtcaagatagagcccgtattcagattggccgtata
tctcgatttggtttacttgaaatgtctcgacagcggctgagtccctctttaggcgaatcg
agtcatcatgtctgcccacgttgcagtggtacaggtactgtccgagataatgaatcttta
gcactgtcaattttaaggctcattgaagaggaagcgctcaaagaaaatacgcatgaagta
catgcgattgttccagtagaagtggcttcatatctgctgaacgaaaaacgagatgctgtg
aatgcaattgaaaaacgccaagagggtgtccgtgctgtgattgtgcctaatgctcaaatg
caaactcctcattacacagtgttacgagttcgtaaaggtgaggaatccctgaccttaagt
tatatgctgcctcaacgttatgaaacagaaatgcctcaaacgcaagatgacccatcaaat
ggacgtaagcactgcgaagagcccgctctttccagcttatcattcccaatcaaaagtact
gatatatccaataaaaatggcgctcacgggctcaacaatgcacggccagaaagaagtttc
tttcaaacgttgataactgtgattcaacgtttgctgggatggatcaagaaaaaagaaacc
cacggccttgaatctaaaaatacagcagctcaacctcaagagaacgcctatgtaaatcgg
aaaactgatacacgtaaggaacgatctccaagagaacctcgtgaagatctggggcgcaat
aagctttctcgttcgcaaaccgcgactagagacaaaactaaaaacaaaaataatagaatt
caattagaagaagacgagaatgtgcaggcgaataaaccccaagctgctgaacgcccacgt
cgtcgtcaacaggatagacgtacgaatacacctcatcctcaaataatagagcaagaagcg
aaaagtctgattgagcctcttttaactcaagaggaagaagtgccacataaagaaacaccg
aaaaaaatcccgccacgtcgttcgcaacgcgcattgactcaaaaaatacgtttaaatcag
acatctcatctgacaaacgcggtcgatatcaccattcgagatcaaacgccccatgaaaca
cctgtgatgattgaagaacagcaaaatgcaccgccgataccagaagaagccactggtttg
acagagaaggcaaatgagaccatggcagaagaagtggaaaaacacatggcccctacctcg
gtcaatgaaaatagtacattcccccgccgctcacgtcgttcacctcgtcatcttcgtgtc
agtgctcaaaagcgccggcgttatcgtgatgatcctgatactgttcaatgtacaatgcct
ttaaaaagtgcggtggactcaccagaattcgcttttggtaaaatttgtctgagtgccttt
tctgagcagatgataaaccccgatattctgttcaatgatgatgttcatctaaaggaaaag
aaacaagagagacaggaagacaaacaggaaaaatcagcatctgttgaatatgtagaaaat
tcgaaaaatgagcaaattgccgccacagaatctgaaaaaaaacaggttttcgcccctgta
acaaaagtctttgtgatcgatcaagcggtgtcttttccgacgaattggaggtggcagcct
tcttcatttatttctgaagacagtacaccggcaggaacacagaatgccatccatcatgcc
agtgttcctgccggtaggccagaagaagtcaagtag
DBGET
integrated database retrieval system
