Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0500
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Entry
HDEF_0500 CDS
T00911
Symbol
holD
Name
(GenBank) DNA polymerase III, psi subunit
KO
K02344
DNA polymerase III subunit psi [EC:
2.7.7.7
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03030
DNA replication
hde03430
Mismatch repair
hde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HDEF_0500 (holD)
03430 Mismatch repair
HDEF_0500 (holD)
03440 Homologous recombination
HDEF_0500 (holD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hde03032
]
HDEF_0500 (holD)
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_0500 (holD)
Enzymes [BR:
hde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HDEF_0500 (holD)
DNA replication proteins [BR:
hde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HDEF_0500 (holD)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HDEF_0500 (holD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_III_psi
Motif
Other DBs
NCBI-ProteinID:
ACQ67254
UniProt:
C4K3W1
LinkDB
All DBs
Position
complement(500793..501227)
Genome browser
AA seq
144 aa
AA seq
DB search
MSNRDRLLQQLGITQWVLKHPSVFQGEMFLQLTENIRFIIVGDPLPAYDNDLIKDVLQAL
RLEPNQVYFLMPFQLKMFPKNTRCHSWRLGVRESLSLIGVQLYSPKWDDFYQNGKAKHAL
WKQICDHETDFYFNCGRSADGISN
NT seq
435 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccgagatcgattattacaacagcttggaatcacacaatgggtattaaaacac
ccctctgtgtttcaaggtgaaatgtttcttcagttaacggaaaatatccgttttatcatt
gtaggagatcctcttcctgcttatgataatgatttaatcaaagatgtattgcaggcgtta
cgtttagaacccaatcaagtgtattttttaatgccttttcagttaaaaatgtttcctaaa
aatactcgttgccatagctggcgattaggggtaagagaatctctatctttgataggggtt
caattatacagcccaaaatgggatgatttttatcaaaatgggaaagccaaacacgctctt
tggaagcaaatttgtgatcatgaaacagatttctattttaactgcggtagatctgccgat
ggcatatcaaattga
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