Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0515
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Entry
HDEF_0515 CDS
T00911
Symbol
rnd
Name
(GenBank) RNase D, processes tRNA precursor
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hde03016
]
HDEF_0515 (rnd)
Enzymes [BR:
hde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HDEF_0515 (rnd)
Transfer RNA biogenesis [BR:
hde03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HDEF_0515 (rnd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
EnY2
Motif
Other DBs
NCBI-ProteinID:
ACQ67269
UniProt:
C4K3X6
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All DBs
Position
514989..516152
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AA seq
387 aa
AA seq
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MTNKKLIESHILNYRLITTNEDLHHICELAVLRKAVALDTEFVRTKTYYAELGLIQLYDG
HRVSLIDPFLITEWAPFYCLLKNKKIVKFLHSAGEDIEIFFHFFKTLPEPLIDSQILAAF
TGRPVSCGFSILVKEFQGIVLNKAESRTDWLARPLSQKQCDYAAEDVFYLLPLANALMKK
IETSGWMEAVKEECELLCQRRSQIQDPEMAYRDIGNASQLNPGQLICLKKLASWRLVYAR
KKNVAINFVIQESYLWKVARYQPTSLSELFHLGLDRRTIRQHGLTLLGLVTESQKTKEDP
SLVIAYLNHEPVYKKIFKEIKDLIQSIGALIGLSHELIGSRKHINQLLNWHFGLIPKEKR
PLLLTGWRAQVLSLELTKILDRHPMMI
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
ttgactaataaaaaacttatcgagagccatatcttgaattatcgtttgattaccaccaat
gaagacttacatcatatttgtgagctggctgttttgcgtaaagcagtagcattagacact
gaatttgtgagaacaaaaacctattatgccgaattgggtttaattcaactgtatgacggt
catcgtgtatcccttattgatccttttttgataacagaatgggcccctttttattgcttg
ttgaaaaataaaaaaatcgtcaaatttttgcattcagcaggagaggatattgaaatattt
tttcatttttttaaaacactccctgaacctttaatagatagccaaattttagcggcattc
acaggccgacctgtttcttgtggtttttctatcttagtgaaagaatttcaagggattgtt
ttaaataaagccgaatccagaacagactggctggctcgtccattgagtcaaaaacaatgt
gattatgcggctgaggatgtgttttatcttttgcctctggcaaatgctttgatgaaaaaa
atagagacctccggttggatggaggcagtcaaagaagaatgtgaattgctttgtcaacgc
cgtagccaaattcaagatcctgaaatggcttaccgtgatatcgggaatgcttctcaactc
aaccctggacaactcatttgcttaaaaaagctggcttcctggcgtttagtttacgcccgt
aaaaaaaatgtcgcgatcaattttgtgatacaagaatcttatttatggaaagtggcgcgt
tatcagccgacttctttatcggagttgttccatttaggcttggaccgtcggaccattcgt
caacatggtttaacccttctgggattagtgacagaaagtcaaaaaacaaaagaggatcct
tcacttgtgatagcttatttaaaccatgagcctgtttataaaaagatatttaaagagatc
aaagatctgatccagtctataggtgctcttattggattaagtcatgagttgatcggatca
cgaaaacatattaatcagctattaaactggcatttcggtttgatcccaaaagaaaaacgc
cctttattattgacaggatggcgagctcaagtgttatctctagaattaaccaaaatactt
gatcgtcatcctatgatgatctga
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