Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0516
Help
Entry
HDEF_0516 CDS
T00911
Symbol
rfaQ
Name
(GenBank) lipopolysaccharide core biosynthesis
KO
K02849
lipopolysaccharide heptosyltransferase III [EC:
2.4.99.25
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde00540
Lipopolysaccharide biosynthesis
hde01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
HDEF_0516 (rfaQ)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
hde01005
]
HDEF_0516 (rfaQ)
Enzymes [BR:
hde01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.25 lipopolysaccharide heptosyltransferase III
HDEF_0516 (rfaQ)
Lipopolysaccharide biosynthesis proteins [BR:
hde01005
]
Core region
HDEF_0516 (rfaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_9
Thioredoxin_9
Motif
Other DBs
NCBI-ProteinID:
ACQ67270
UniProt:
C4K3X7
LinkDB
All DBs
Position
complement(516181..517269)
Genome browser
AA seq
362 aa
AA seq
DB search
MVNMVVKKNNFERILVIKLRHFGDVLLITPLLTTLQQHAPNAKIDVLLYSGTEKILSKYK
TLHHIWTIDRQLKHAGIKAQILGEWALFQSLKKQNYSLILNLSDQWRSAFYCRFLKPELS
IGFHYAKRDNALWCSCYDHLVPVSNHVKQHTVINNLSILNPLKLSKIITQVSMSYGSDDI
FYVEKILHERSLSDYILIHPFARWHFKTWQASCFSKLINYLTAQKEKIVITGGPEKTEQD
YVLNVIEDCSQKEDIVNLVGLLSFSQLAVLIERAQIFIGVDSVAMHMAAALKTPSVVLFG
PSNLKQWSPWEAPHTLLWAGDHRKLPLPEEVDTRTCDRYLDAIPLKKVIDAVDFWRTQRK
VR
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatatggtggtaaaaaaaaacaactttgaacgaattttagtcattaaattgcgt
catttcggagatgttttactcatcacacctttactgacaaccttacagcaacatgcgcct
aatgcaaaaattgatgtgttgttgtattcaggaacagaaaagattttatcgaaatataaa
acccttcatcatatttggacaatcgatcgtcaattgaaacatgcagggatcaaagctcaa
atattaggggaatgggctttatttcaatcgttaaaaaaacaaaattattctttgattctt
aatttatcagatcaatggcggtctgccttttattgccgctttttaaagcctgagctcagt
atcggtttccattatgcaaagcgtgataatgcgctttggtgctcttgttatgatcatctg
gtgcctgtttcaaatcacgtcaaacaacatactgtcatcaataatttatctatattaaat
cccttaaaattatcgaaaatcattacccaggtcagtatgtcctatgggtctgatgatatt
ttttatgtagaaaaaattttacatgaaagatcattgagtgattatattttgattcatcct
tttgcgcgttggcactttaaaacttggcaggcatcttgtttttctaaattaataaattat
ttaaccgcacaaaaagagaaaatagtgatcacaggggggcccgaaaaaacagagcaggat
tacgttcttaatgtgatcgaagattgcagtcaaaaagaggatatcgtgaatcttgtgggc
cttctgagtttctctcagttagcggtgttgattgaacgagctcaaatttttattggtgtc
gattctgttgctatgcatatggctgcggctttaaaaacaccttcagtcgtattattcgga
ccgagtaacttgaaacaatggtccccttgggaagcacctcatactttattgtgggcagga
gaccatcgaaagttacctcttccagaagaggtagatacccgcacttgcgatcgttatctg
gatgcaatcccattgaaaaaagtcatagatgcggtggatttttggcgaactcaacgcaag
gtaaggtag
DBGET
integrated database retrieval system
