KEGG   Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_0683
Entry
HDEF_0683         CDS       T00911                                 
Symbol
dnaQ_1
Name
(GenBank) DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
hde  Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03030  DNA replication
hde03430  Mismatch repair
hde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:hde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HDEF_0683 (dnaQ_1)
   03430 Mismatch repair
    HDEF_0683 (dnaQ_1)
   03440 Homologous recombination
    HDEF_0683 (dnaQ_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hde03032]
    HDEF_0683 (dnaQ_1)
   03400 DNA repair and recombination proteins [BR:hde03400]
    HDEF_0683 (dnaQ_1)
Enzymes [BR:hde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     HDEF_0683 (dnaQ_1)
DNA replication proteins [BR:hde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     HDEF_0683 (dnaQ_1)
DNA repair and recombination proteins [BR:hde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     HDEF_0683 (dnaQ_1)
SSDB
Motif
Pfam: RNase_T Rv2179c-like DNA_pol_A_exo1
Other DBs
NCBI-ProteinID: ACQ67421
UniProt: C4K4C8
LinkDB
Position
678882..679607
AA seq 241 aa
MTRQIVLDTETTGLNKTGPHYEGHNIIEIGAVEVINRRLTGKTFHTYVRPNRQVDPEAYQ
IHGISDEFLSDKPRFSEIFSQFFEFIRGSELIIHNAAFDIGFMDYEFSALQQNIPKTNTF
CTVTDTLALARRLFPGKRNSLDALCDRYQIDNSKRTLHGALLDAQILAEVYLAMTGGQTL
FSFSDETDETDIRNMTVRPKRVKTSSQLKIIYASCDELDEHQASLDLLEKKEGSCIWRSA
T
NT seq 726 nt   +upstreamnt  +downstreamnt
atgacccgacaaattgttttggatactgaaaccaccggactaaataaaacaggccctcat
tatgagggccacaatattatcgagattggggcggttgaagtcattaaccgtcgcctcaca
ggcaagacttttcatacgtatgtgaggcccaaccgtcaggtggatcccgaagcctatcaa
attcatggtattagtgatgaatttttatccgataaaccgcgcttttctgaaattttctct
caattttttgaatttatacgcggttctgaattaatcatccataatgccgcttttgatatt
ggttttatggattatgaattttcggcgctccagcaaaatatcccaaaaacaaacactttt
tgtacggtcaccgatactttagcactcgcccgccgtttatttcctggtaaacgcaatagt
ttagatgctttatgcgatcgttatcagatagataacagcaaacgtactttacacggggca
ttgcttgatgcgcagattttagcagaagtgtatttagccatgaccggcgggcaaacgtta
ttttctttttcagacgaaacggacgagacagacattcgtaacatgacagtgcgtccaaag
cgggtcaaaacttcatctcaattaaagatcatttacgccagctgtgatgagcttgatgag
catcaagcaagtctggatctcttagaaaagaaagaaggctcttgcatatggcgatctgcc
acctaa

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