Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_1162
Help
Entry
HDEF_1162 CDS
T00911
Symbol
hupB
Name
(GenBank) DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation
KO
K03530
DNA-binding protein HU-beta
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hde03032
]
HDEF_1162 (hupB)
03036 Chromosome and associated proteins [BR:
hde03036
]
HDEF_1162 (hupB)
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_1162 (hupB)
DNA replication proteins [BR:
hde03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
HDEF_1162 (hupB)
Chromosome and associated proteins [BR:
hde03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
HDEF_1162 (hupB)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
HDEF_1162 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
ACQ67827
UniProt:
C4K5I4
LinkDB
All DBs
Position
1083881..1084108
Genome browser
AA seq
75 aa
AA seq
DB search
MKKNELITKVAVDAEISKAKAEAEVNSLINSVTEELKAGGAVALTGFGTFQVKERAARTG
RTPKLVRTSRSRRPN
NT seq
228 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaacgaactgattacgaaagtggcagtagatgcagaaatcagcaaggccaag
gccgaagctgaggttaattccttgatcaactcggtgacagaagagcttaaagcgggtggg
gcagtggcgctcactggatttggtacttttcaggtcaaggaacgcgcagcgcgaactggg
cgaacccccaaactggtgagaacatccagatcgcggcggccaaattaa
DBGET
integrated database retrieval system
