Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_1516
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Entry
HDEF_1516 CDS
T00911
Symbol
gyrA
Name
(GenBank) DNA gyrase (type II topoisomerase), subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hde03032
]
HDEF_1516 (gyrA)
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_1516 (gyrA)
Enzymes [BR:
hde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
HDEF_1516 (gyrA)
DNA replication proteins [BR:
hde03032
]
Prokaryotic type
DNA Topoisomerases
HDEF_1516 (gyrA)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HDEF_1516 (gyrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Ran_BP1
Motif
Other DBs
NCBI-ProteinID:
ACQ68139
UniProt:
C4K6E6
LinkDB
All DBs
Position
complement(1390057..1392591)
Genome browser
AA seq
844 aa
AA seq
DB search
MSQLAKEIIPINIEQELTDSYLEYAMSVIIGRALPDVRDGFKPVHRRVLYAMKVLGNDWN
KAYKKSARVVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYMLVDGQGNFGSVDGDSPAAM
RYTEIRMSKIAHEILADLDKDTVNFVPNYDETEQIPEVMPTKIPNLLINGSSGIAVGMAT
NIPPHNISEVIAACLAYIDDENISVEHLMKHMPGPDFPTAGIIYGSKGIEQAYGTGRGRI
YIRAKANIEVDEKSGRQSIIVDEIPYQVNKTKLIEKIAELVKEKRLEGISCLRDESDKEG
MRILIELKRDAIAEVILNQLYSLTQLQVSFGINMVALDHGQPKVMTLKDILRAFIRHRRE
VVTRRTLFELRKARDRAHILEALAVALANIDVIIQLIRNAGNPTQAKTGLLAQAWPLGHV
TSMLDCVGDEKDIARPEWLEARFGIHNGEYHFTEQQAQAILDLRLQKLTGLEHDNLLNEY
KELLNAIHELQKILSDPDRLLEVIREEFLSIKAQYHDPRRTEIKINTADIHLEDLIPQED
VVVTLSHQGYIKYQPLSDYEAQHRGGKGKSAARTKDEDFIERLLVANTHDNILCFSSRGR
LYWLKVYQLPEASRGSRGRPIVNLLPLNPDERITAILPIKNYETGQYVFMATACGVVKKI
ALLEFSRPRSTGIYTLNLDDGDELIGVDLTDGTNEVMLFSSKGKVIRFSEDDVRAMGRTA
RGVGGIRLAQEDRVVSLIIPRGDGDILTVTANGYGKKTSKEEYPTRSRNGMGVISIKVNG
RNGNVVGAIQVDENDHLMMITDAGTLVRTRASEMNSISRNTKGVTLIRTQNNEKVVGLQR
LVED
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcttgccaaagaaattatcccaatcaacattgaacaagaacttacagattcc
tatttagaatatgctatgtcggttattattgggcgagctttacccgatgttcgagatggt
ttcaaacccgttcatcgccgtgtgttatatgccatgaaagtattggggaatgattggaac
aaagcctataaaaaatcggccagggtcgtcggggatgtgattggtaaatatcatcctcat
ggtgacaccgcagtatatgatgccattgttcgtatggcccaacctttttctttaagatac
atgctggtggatggccagggcaattttggctcagttgacggagattctcccgctgccatg
cgttataccgaaattcgcatgtcaaaaatagcgcacgaaatactggcagatcttgacaaa
gacacagtgaattttgtgcccaattacgatgaaacagagcaaattccagaggtgatgcca
accaaaataccgaatttgttgatcaatggatcctcgggtattgccgttgggatggcaacc
aatattcctcctcataatatttctgaagtcatagcagcctgccttgcttacattgatgat
gaaaatatcagtgttgaacatttgatgaaacatatgccaggccctgatttccctaccgcc
ggtattatttacgggagtaaaggcatagaacaggcctatggtacagggcgaggccgaatt
tatattcgagctaaagcaaacatagaagtggacgaaaaatccgggcggcaaagcattatt
gtcgatgaaattccctatcaggtgaataaaacaaaattgattgaaaaaatcgcagaactg
gtcaaagaaaaacgcttggaagggatcagttgcttgcgtgacgaatctgataaagagggg
atgcggatcctcattgaattaaaacgcgatgccatcgctgaggtgatactcaatcagcta
tattcgctgacacaattacaggtttcttttggcatcaatatggtggctttggatcacggg
caacccaaagtcatgaccctaaaagacattttgagggcttttatacgacatcggcgagaa
gtggtgacacgccgtacgctctttgaattacgtaaagctcgtgatcgggctcatattttg
gaagcattagccgtggccttagccaatattgatgtcattattcagttaattcgcaatgct
gggaaccccactcaagccaaaacaggattgctggcgcaggcttggccattaggtcatgtg
acgagcatgttagattgtgttggagatgaaaaagatatcgctcgtccagaatggttagaa
gccagatttgggattcataacggggaatatcattttactgagcagcaagcccaagcgata
ctggatctgcgtttacaaaaattaacgggtctggaacacgacaatctactcaatgaatat
aaagaactgttaaacgccattcacgaattacaaaaaatcctttctgatcccgatcgttta
ttggaagtcattcgagaagaatttttgtccatcaaagcccaatatcatgatccacgtcgt
actgaaatcaaaatcaataccgcggatattcatcttgaagatttgattcctcaagaagat
gtggtggtgacactttctcatcaaggatatataaaatatcaacctctgagcgattacgaa
gcccagcacaggggagggaaagggaaatcggcggctcgaaccaaggacgaggactttatt
gagcgcctgcttgtggccaatacgcacgataacattttatgtttttcaagccgtgggcgc
ctttattggctgaaggtatatcaattacctgaagcaagtcgtggatcacgaggcaggccc
atagtgaatctattgccattaaatcccgatgaacgcattaccgctattttaccgattaaa
aattatgaaacagggcaatatgtcttcatggcaaccgcctgtggcgtggtcaaaaaaatc
gctttattggaatttagtcgccctcgcagcactggcatctacacactcaatttagatgac
ggggatgaactgataggcgtcgacctcacggatggcactaatgaagtgatgttattttcc
tctaaaggaaaagtcattcgtttttcagaagatgatgtccgcgccatgggccgaaccgca
agaggggttgggggaatacgtttggctcaagaagatcgcgttgtgtcactgatcattcct
cgtggagacggagatatcttaaccgtgacagcgaatggttatggtaaaaaaacctccaaa
gaagaatatcccacaaggtctcgaaacggtatgggcgtgatttctatcaaagtgaatgga
cgcaatggcaatgtagtgggggcgattcaagtagatgaaaacgatcacctaatgatgatt
actgatgcaggcactttagttcgtactcgtgcatctgaaatgaattcaatcagccggaac
acgaaaggggtgaccttaatacgtactcaaaataatgaaaaagtagtcggtttacaacgt
ttggtagaagactaa
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