Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_1521
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Entry
HDEF_1521 CDS
T00911
Symbol
hupA_3
Name
(GenBank) HU, DNA-binding transcriptional regulator, alpha subunit -3
KO
K05787
DNA-binding protein HU-alpha
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hde03032
]
HDEF_1521 (hupA_3)
03036 Chromosome and associated proteins [BR:
hde03036
]
HDEF_1521 (hupA_3)
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_1521 (hupA_3)
DNA replication proteins [BR:
hde03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
HDEF_1521 (hupA_3)
Chromosome and associated proteins [BR:
hde03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
HDEF_1521 (hupA_3)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
HDEF_1521 (hupA_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-CCDC81_bac_2
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
ACQ68144
UniProt:
C4K6F1
LinkDB
All DBs
Position
1397336..1397680
Genome browser
AA seq
114 aa
AA seq
DB search
MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA
RNPQTGEPIELPACYVPSLNFAKALKDALKGSEDVGGKTKLAAPVKKKQKVAAK
NT seq
345 nt
NT seq
+upstream
nt +downstream
nt
atgaataaggctcaactgattgatgaaatagcagaaaatgctggtataacaaaaattaaa
gccaatacggttttaaatatcattttagatcgaattactgaatctttgaaaaaacacgag
tcagtgcaactcgtgggttttggtacctttaacgtcaaacatcgtgatgcgcgtaatgcg
cgtaaccctcaaactggtgaaccaatagaacttcctgcatgctatgttccttctttgaac
tttgcaaaagccttaaaagacgcacttaaagggtcagaggatgtggggggaaaaacaaaa
ttagcagcaccagtcaaaaagaagcaaaaagttgccgctaaatga
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