Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_1529
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Entry
HDEF_1529 CDS
T00911
Symbol
uvrC
Name
(GenBank) excinuclease UvrABC, endonuclease subunit
KO
K03703
excinuclease ABC subunit C
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HDEF_1529 (uvrC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_1529 (uvrC)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HDEF_1529 (uvrC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
UvrC_RNaseH
UVR
GIY-YIG
HHH_5
HHH
HHH_2
Hormone_4
MciZ
Motif
Other DBs
NCBI-ProteinID:
ACQ68151
UniProt:
C4K6F8
LinkDB
All DBs
Position
1405485..1407308
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AA seq
607 aa
AA seq
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MFYAEEFLKTVTHQLGVYRMYDTTGAVIYVGKAKDLKKRLTSYFRKQVSSHKTEALVKHI
FKIDVTVTHSETEALLLEHNYIKRYQPRYNVLLRDDKSYPLIFLSAENHPRLTIHRGARH
QKGDYFGPFPNSYAVRETLTLLQKLFPVRQCENTVYRNRSRPCLQYQIKRCSGPCVKGLT
SDEEYQQQVNYVRLFLSGKDQQVLNKLVSQMEEASRSMDFEKAARIRDQIQSVRQVTEKQ
FVSGDNQDLDVIAVAFEAGLACVHVLFIRYGKVLGSRSYFPKVPGGTKLGEVVETFVGQF
YLAGSEMRTLPKEILLNFSLPEKTALSSLLTERAGQKIQIQNCPRGDRARYLKLASTNAV
SALSTRLSQKSTFHSRLKALEIVLNLTPIKRMECFDISHHMGEQTVASCVVFNEQGPVKS
EYRRYNIVGLPPGDDYAAMSQVLQRRYSKSLKDEQIPDIIFIDGGKGQLAKAIDMFSALK
VCWNKDKPKLVAVAKGSERKPGLETLFFYVTGKGMSLPCDSLALHLIQHIRDESHTHAIT
GHRRRHAKIKNTSMLEMIEGVGPRRRQMLLKYMGGLKPLLNASVEEIAKIPNISRILAQK
IYNALKQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgttttatgccgaagaatttttaaaaacagtcacacatcagcttggtgtatatcgtatg
tacgatacgactggggctgttatttatgtcggtaaagcgaaagatctgaagaaacgtctc
accagctattttcgaaaacaggtcagcagccataagacagaagctttagtaaaacatatt
tttaaaattgatgttacagtcacgcactctgaaacagaagcactattactagaacacaat
tatatcaagcgttatcagccaaggtacaatgtgcttttacgcgatgataagtcttatcct
cttatttttctgagtgcagaaaatcatccccgtctcaccatccatcgtggagcgagacat
caaaaaggagattattttgggcccttcccaaattcttatgcagtcagagaaaccttaacc
ttattacaaaaactttttcccgtacgacaatgtgaaaacacggtataccgaaatcgctca
cgcccctgtttacagtatcaaattaagcgatgttctggtccttgcgttaaaggattaacc
agtgacgaagaatatcaacagcaggtgaattatgtccgtttgtttctctctggaaaagat
caacaagtattaaacaaattggtatctcagatggaagaggccagtcgatcaatggatttt
gaaaaagccgctcgcattcgtgatcaaattcaatccgttcggcaggtcaccgaaaagcaa
tttgtttctggggataatcaagatctcgatgtcatagcagtggcttttgaggctggctta
gcttgtgtccatgttttatttattcgttatggcaaggtattaggtagtcgcagctatttt
cctaaggtacctggaggcacaaaattgggtgaggtggtcgaaacttttgttggacaattt
tatttagcaggtagtgaaatgagaacgctcccgaaggaaattttactcaatttctcttta
cctgaaaaaactgcgctttcttctttattaacagaacgagcaggtcaaaaaattcaaata
caaaattgtcctagaggagatcgagcccgttacttaaaactggcctctactaatgctgtt
agtgccttaagcacccgtttatcccaaaaatccacctttcacagcagactcaaagcgtta
gaaattgtcttgaatctcacaccgataaaacgtatggaatgctttgatattagtcatcat
atgggagaacaaacggttgcttcttgtgttgtttttaacgaacagggccctgtgaaatca
gaatatagacgttataacatagtgggtctccccccgggagacgattatgctgccatgtca
caggtgctacaacgccgttatagtaaatcattaaaagacgaacaaatccccgatattatt
tttattgatggaggtaaagggcaattagcaaaggcgatagatatgttctctgccttaaag
gtgtgctggaacaaagacaaaccgaagctggttgctgttgcaaaaggcagtgaacgtaag
cctggattggaaacattatttttttatgttacagggaaggggatgtctttaccttgtgat
tcattggcactacatttaattcagcatattcgtgacgagtcacatacccatgcgatcaca
gggcatcggcgacgtcacgctaaaataaaaaataccagcatgttagaaatgattgagggc
gttggtcctcgccgcagacaaatgttattaaaatatatgggtggactaaaacctttactg
aatgccagtgttgaagagatcgctaaaattccaaatatctctcgaatattggctcaaaaa
atttataatgcactgaaacagtga
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