Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_1619
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Entry
HDEF_1619 CDS
T00911
Symbol
uvrB
Name
(GenBank) excinulease of nucleotide excision repair, DNA damage recognition component
KO
K03702
excinuclease ABC subunit B
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HDEF_1619 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_1619 (uvrB)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HDEF_1619 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HDEF_1619 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
DUF87
Tea_C
SBDS_domain_II
Motif
Other DBs
NCBI-ProteinID:
ACQ68231
UniProt:
C4K6N8
LinkDB
All DBs
Position
complement(1468797..1470812)
Genome browser
AA seq
671 aa
AA seq
DB search
MRKAFKLHSNFKPSGDQPEAIHQLKEGLKNGLMHQTLLGVTGSGKTFTVANVIADLNRPT
MILAPNKTLAAQLYGEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAVNEHIE
QMRLSATKALLERQDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILARLSELQ
YSRNDQVFQRGTFRVRGENIDIFPAESSDFAVRIELFDDEVERLSLFAPLTGHIQKTVPR
FTVYPKTHYVTPRARILQSMEEIKIELAQRREQLLANNKLVEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRYLSGRAAGEPPPTLFDYLPSEGLLVIDESHVTIPQIGGMYKGDRSRKQT
LVEYGFRLPSALDNRPMRFEEFESLAPQTIYISATPGPYELGKSAGELIEQVVRPTGLLD
PVIEVRPVATQVDDLLSEIRQRVVIDERVLVTTLTKRMAEDLTEYLAEQGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDKITVSMKKAIDETERRRKKQESYNKEKGIVPKKLEKKIRDILELG
QSYTKGKARKRTTTLEENSTNYTALSPKAIKKKIDELEQKMHDHAQNMEFEKAGQLRDEI
QQLTLLLNAPQ
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaagcattcaaattacactcaaattttaaaccttctggagatcaacctgaagcc
attcatcaactgaaagagggattaaaaaatggtttaatgcatcagacgttattgggggtt
acaggttcaggaaaaacttttacggtcgcgaatgttatcgccgatcttaatcggcccacg
atgatcctggcacctaataaaacattggctgctcagctatatggtgaaatgaaagatttt
tttccagaaaatgccgtggaatatttcgtttcttattatgattattatcaacctgaagcc
tatgtacccagttcagacacctttatcgaaaaagacgccgccgttaatgaacatattgag
caaatgaggctttctgccacgaaagcgcttctggaacgtcaggatgtcatcgtggtggct
tcggtttctgctatctacggcttgggtgatcctgatctgtatctgaaaatgatgcttcat
ttaacaaaaggtatgatcatagatcaaagagccatcctggcgcgtttgtcagaattacaa
tacagtcgtaatgatcaggtttttcagagagggacttttcgcgtcagaggcgagaatatt
gatatttttccagcagaatcaagcgattttgcggtgaggatcgaattatttgatgatgaa
gtagaacgcctatcattgtttgctcctttaacggggcacatacagaagacggttccccgt
ttcaccgtttacccaaaaacccattatgtcacgcccagggcgcgtattttacaatctatg
gaagagatcaaaattgagctggcgcaaagacgtgaacagttgttggcgaacaacaagttg
gttgaagaacagcgcctaacccagcgtactcaatttgatctggaaatgatgaacgagctg
ggttactgctctgggattgaaaattactcacgttatctctcgggtcgtgctgccggagaa
ccacctccaaccctatttgattatcttccttcagaaggtctattggtaattgatgaatca
catgtgaccattccgcaaatcggtggtatgtataaaggcgaccgttctcgtaaacaaacc
ttagtagaatatggctttcgtttgccttctgctttagataatcggcccatgcgttttgag
gaatttgaatcgcttgcacctcaaaccatctatatttcggcaactccgggcccctatgaa
ctcggaaaatcagcgggagagctgatagaacaggtggttcgtccaacaggcttactggat
cctgttattgaagtcaggcccgtggctacccaggtagatgatcttttatctgaaattcga
cagcgggtggtgattgatgagcgcgtgctggtgaccacattaacaaaacgcatggcagaa
gatttaacagaatatttagcagaacagggggaacgtgtccgttatttacactcagatatc
gatactgtagagcgtgttgagatcattcgtgatttacgactaggagaatttgatgttttg
gtgggcattaacctgttgcgagaaggtttggatatgcctgaggtgtctttggtggccata
ttagatgcagataaagaaggttttttgcgatctgagcgctctttaattcaaactattggc
cgcgctgcacggaatttaaatggcaaagccattttatatggtgacaaaatcacggtttca
atgaaaaaagccatagatgaaactgaacgtcggcgtaaaaaacaagagtcttacaataaa
gaaaagggtattgttccaaaaaaattagagaaaaagattcgggatattttagagctgggc
caatcttataccaaagggaaagcgagaaaacgtaccacaacacttgaagaaaacagcact
aactatactgccctctccccaaaagcaattaagaaaaagattgatgaattagaacaaaaa
atgcacgatcatgcgcagaatatggagtttgaaaaagctgggcaactacgagatgaaatt
caacaactgaccctattattaaatgcgcctcaataa
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