KEGG   Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_1619
Entry
HDEF_1619         CDS       T00911                                 
Symbol
uvrB
Name
(GenBank) excinulease of nucleotide excision repair, DNA damage recognition component
  KO
K03702  excinuclease ABC subunit B
Organism
hde  Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:hde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    HDEF_1619 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hde03400]
    HDEF_1619 (uvrB)
DNA repair and recombination proteins [BR:hde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     HDEF_1619 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      HDEF_1619 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_30 UB2H AAA_22 DUF87 Tea_C SBDS_domain_II
Other DBs
NCBI-ProteinID: ACQ68231
UniProt: C4K6N8
LinkDB
Position
complement(1468797..1470812)
AA seq 671 aa
MRKAFKLHSNFKPSGDQPEAIHQLKEGLKNGLMHQTLLGVTGSGKTFTVANVIADLNRPT
MILAPNKTLAAQLYGEMKDFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAVNEHIE
QMRLSATKALLERQDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRAILARLSELQ
YSRNDQVFQRGTFRVRGENIDIFPAESSDFAVRIELFDDEVERLSLFAPLTGHIQKTVPR
FTVYPKTHYVTPRARILQSMEEIKIELAQRREQLLANNKLVEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRYLSGRAAGEPPPTLFDYLPSEGLLVIDESHVTIPQIGGMYKGDRSRKQT
LVEYGFRLPSALDNRPMRFEEFESLAPQTIYISATPGPYELGKSAGELIEQVVRPTGLLD
PVIEVRPVATQVDDLLSEIRQRVVIDERVLVTTLTKRMAEDLTEYLAEQGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDKITVSMKKAIDETERRRKKQESYNKEKGIVPKKLEKKIRDILELG
QSYTKGKARKRTTTLEENSTNYTALSPKAIKKKIDELEQKMHDHAQNMEFEKAGQLRDEI
QQLTLLLNAPQ
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgcgtaaagcattcaaattacactcaaattttaaaccttctggagatcaacctgaagcc
attcatcaactgaaagagggattaaaaaatggtttaatgcatcagacgttattgggggtt
acaggttcaggaaaaacttttacggtcgcgaatgttatcgccgatcttaatcggcccacg
atgatcctggcacctaataaaacattggctgctcagctatatggtgaaatgaaagatttt
tttccagaaaatgccgtggaatatttcgtttcttattatgattattatcaacctgaagcc
tatgtacccagttcagacacctttatcgaaaaagacgccgccgttaatgaacatattgag
caaatgaggctttctgccacgaaagcgcttctggaacgtcaggatgtcatcgtggtggct
tcggtttctgctatctacggcttgggtgatcctgatctgtatctgaaaatgatgcttcat
ttaacaaaaggtatgatcatagatcaaagagccatcctggcgcgtttgtcagaattacaa
tacagtcgtaatgatcaggtttttcagagagggacttttcgcgtcagaggcgagaatatt
gatatttttccagcagaatcaagcgattttgcggtgaggatcgaattatttgatgatgaa
gtagaacgcctatcattgtttgctcctttaacggggcacatacagaagacggttccccgt
ttcaccgtttacccaaaaacccattatgtcacgcccagggcgcgtattttacaatctatg
gaagagatcaaaattgagctggcgcaaagacgtgaacagttgttggcgaacaacaagttg
gttgaagaacagcgcctaacccagcgtactcaatttgatctggaaatgatgaacgagctg
ggttactgctctgggattgaaaattactcacgttatctctcgggtcgtgctgccggagaa
ccacctccaaccctatttgattatcttccttcagaaggtctattggtaattgatgaatca
catgtgaccattccgcaaatcggtggtatgtataaaggcgaccgttctcgtaaacaaacc
ttagtagaatatggctttcgtttgccttctgctttagataatcggcccatgcgttttgag
gaatttgaatcgcttgcacctcaaaccatctatatttcggcaactccgggcccctatgaa
ctcggaaaatcagcgggagagctgatagaacaggtggttcgtccaacaggcttactggat
cctgttattgaagtcaggcccgtggctacccaggtagatgatcttttatctgaaattcga
cagcgggtggtgattgatgagcgcgtgctggtgaccacattaacaaaacgcatggcagaa
gatttaacagaatatttagcagaacagggggaacgtgtccgttatttacactcagatatc
gatactgtagagcgtgttgagatcattcgtgatttacgactaggagaatttgatgttttg
gtgggcattaacctgttgcgagaaggtttggatatgcctgaggtgtctttggtggccata
ttagatgcagataaagaaggttttttgcgatctgagcgctctttaattcaaactattggc
cgcgctgcacggaatttaaatggcaaagccattttatatggtgacaaaatcacggtttca
atgaaaaaagccatagatgaaactgaacgtcggcgtaaaaaacaagagtcttacaataaa
gaaaagggtattgttccaaaaaaattagagaaaaagattcgggatattttagagctgggc
caatcttataccaaagggaaagcgagaaaacgtaccacaacacttgaagaaaacagcact
aactatactgccctctccccaaaagcaattaagaaaaagattgatgaattagaacaaaaa
atgcacgatcatgcgcagaatatggagtttgaaaaagctgggcaactacgagatgaaatt
caacaactgaccctattattaaatgcgcctcaataa

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