Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_1621
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Entry
HDEF_1621 CDS
T00911
Symbol
pcnB
Name
(GenBank) poly(A) polymerase I
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDEF_1621 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hde03019
]
HDEF_1621 (pcnB)
Enzymes [BR:
hde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
HDEF_1621 (pcnB)
Messenger RNA biogenesis [BR:
hde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HDEF_1621 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
ATP-synt_ab
Motif
Other DBs
NCBI-ProteinID:
ACQ68233
UniProt:
C4K6P0
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All DBs
Position
1471674..1472993
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AA seq
439 aa
AA seq
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MTIIPRKKHPISRKNISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNAT
PDQVRELFRNCRLIGRRFRLAHIMFGTDTIEVATFRGHHGLKSANQNTHSSQRAQNGMLL
RDNIFGSIEEDAHRRDFTVNSLYYGIADFTLRDYTGGLKDIKQGLIRLIGDPEIRYPEDP
VRMLRAVRFSAKLDMAISSETGKPIPRFAFLLKEVPGARLFEESLKLLQSGHGYKTYLKL
CEYQLFPLLFPLIARNLAQKSDSFMEKIIIQALKNTDERLKNKLGIHPAFLFSAMFWYPF
VERTQNIKKEHGKLTYIETFSMAADDILNEICRSFAIPKRFTMVMKDIWLFQIRFSHSQK
PRAFQLTEHPKFRIAYDLLVLRAEVENQHNLKKIAQWWAEFQAGTVLQKELMIDALQQDS
SRRSSRSKRTPDIKTLNTE
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgaccattatacctcgcaaaaaacatcctatttctcgaaaaaatatcagtgaaaatgcg
ctgaaagtactctatcgtttaaataaggcgggttatgaggcctatttggttggaggggga
gtgcgtgatctgttattgggtaaaaaacccaaggattttgatattaccactaatgccacg
ccagatcaggtgcgtgaattatttcgaaattgtcgattaattggtcggcgtttccgtttg
gcgcatattatgttcggcacagataccattgaggtggccacttttcgaggccatcatggg
ctaaaatctgcaaaccaaaacactcattcttctcaacgcgcacaaaatggcatgttactt
cgggataatatctttggctctattgaagaagacgcccatcgtcgtgattttactgttaac
agtttgtactatgggatagccgattttacattacgtgattacacaggtggcctgaaagat
atcaaacaggggctcattcgtttaattggtgatcctgaaatacgttatccagaagatcca
gtgcgaatgctaagagccgtgcgcttttcagccaagttagatatggctatcagttctgaa
acaggaaaaccgataccccgcttcgctttcctattaaaggaagtccccggtgcacgatta
tttgaagaatcattgaaattattacagtccggtcatggatacaaaacttatcttaagctt
tgtgaatatcaactttttccattgttatttccattgattgctcgaaatctggctcaaaaa
agcgattcttttatggaaaagatcatcattcaggcgctcaaaaataccgatgaacgcttg
aaaaataaattagggattcatcccgcttttttgttctcagccatgttttggtatcccttc
gttgaaagaactcaaaatataaaaaaagaacacggcaaattgacctatattgaaactttt
tcgatggcggcggatgatattttgaatgaaatttgtcgttcttttgcgattcctaaacgt
tttactatggtgatgaaggatatttggttatttcaaattcgtttctctcattctcaaaaa
ccccgcgcattccaattgacggaacatcctaaatttcgcattgcatatgatttattagtt
ttaagagcagaagtagaaaatcagcataatcttaaaaaaattgctcagtggtgggctgag
tttcaagcaggtacagtattgcaaaaagaattgatgatagatgctctccaacaagactca
agtcgtcggagctctcgttccaaaagaacgcctgatattaaaacattgaacactgagtag
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