Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_1767
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Entry
HDEF_1767 CDS
T00911
Symbol
topA
Name
(GenBank) DNA topoisomerase type I, omega protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hde03032
]
HDEF_1767 (topA)
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_1767 (topA)
Enzymes [BR:
hde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HDEF_1767 (topA)
DNA replication proteins [BR:
hde03032
]
Prokaryotic type
DNA Topoisomerases
HDEF_1767 (topA)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HDEF_1767 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
DUF2399
Toprim_4
Methyltransf_PK
DUF7351
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
ACQ68363
UniProt:
C4K720
LinkDB
All DBs
Position
complement(1605629..1608250)
Genome browser
AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSHYVVKSSVGHIRDLPKSGSNNKKNASEIIKKQKTEKK
MFQDHQSSLIKRMGIDPYHGWKAQYEILSGKEKVVSELKALAAKADHIYLATDLDREGEA
IAWHLREVIGGDPQRFSRVIFNEITQNAIQQAFKKPGELNMNRIHAQQARRFMDRVVGYM
VSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPQEYWHLEANLLTPQKIMIPMMV
SHFEGEPFKPLNREQTYAAVNDLEDAQYVVLDRKDKPTSSKAGAPFITSTLQQAASTRLG
FGVKKTMLMAQRLYEAGHITYMRTDSTHLSQDALSMVRNYIQKHFGNRYLISPAYEYGNK
KNAQEAHEAIRPSNVDVFSEQLEDMEPDARKLYQLIWRQFVACQMTPAQYDVTTLIVEAK
NYQLRAKGRTLRFDGWTKVMPALRKGDEEETLPIIAVGTSMHLEKLIPSQHFTKPPGRYS
EASLVKELEKRSIGRPSTYATIISTVQERGYVRIENRRFYAEKMGEIVTNRLEENFRELM
NYDFTARMENALDQIAQHQAEWKKVLDEFFSEFSEQLNIAEKDPSEGGMRPNSMVIMDIN
CPACGQKMGIRTASTGVFLGCSSYALPPKERCKTTLNLISENEILNLLDGDEAETNALRS
RRRCEKCETAMDSYLLDTARKLHICGNNPICDGYQMEQGEFRIKGYEGPIVECDKCAHEM
HLKVGRFGKYMGCTNEECKNTRKILRNGEVAPPKENPVPLPELLCEKSDAYFVLRDGAAG
LFLAANTFPRSRETRAPRVEELQRFKDRLPEKWHYLVEAPLKDTEGNKTFLRFSRKTKEQ
YISSEKSGKATGWCAFYIDGQWVEGKKRPLVKS
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctcgtgatagttgagtctccggctaaagccaaaacaattaataaatat
ttaggcagtcattatgtggtgaaatcgagtgtagggcatatccgcgatttaccaaaaagt
ggttctaataataaaaaaaacgcttcagaaatcataaaaaaacaaaagactgaaaaaaag
atgtttcaagatcatcaaagtagcctgatcaaacgtatggggattgatccctatcatggc
tggaaggcgcaatatgaaattttatctggtaaagaaaaagtggtttccgaattgaaagcc
ttagcagcaaaggcagatcatatctatttggcgacagacttagatcgtgaaggggaagcg
attgcgtggcatttacgtgaagtcattggcggtgatccccagcgtttcagtcgggtgatt
ttcaatgaaatcacccaaaatgcgattcaacaggcttttaaaaagccaggcgaattaaat
atgaatcgcattcatgctcaacaggctcggcgatttatggatcgtgttgtgggttatatg
gtatctccccttttgtggaaaaaaatcgcccgtgggctatccgcagggcgagtgcaatct
gttgctgtccgcctcgtcgtagaaagagaaagagaaatcaaagcttttgtgcctcaagaa
tattggcatttagaggcaaatctgttgacaccacagaaaatcatgatccccatgatggta
agtcattttgaaggtgagccttttaaacctttgaatcgagagcaaacctatgctgcggtt
aacgatctagaagatgcacaatatgttgttttagaccgaaaagacaaaccgaccagcagt
aaagcgggcgcaccttttattacctccacgttacaacaagcagcaagcactcgcttaggg
tttggcgttaaaaaaaccatgttgatggcgcaaaggttatatgaagcaggtcacatcact
tatatgcgtactgattccacacatctcagccaggacgcattaagcatggtgaggaattat
attcagaagcattttggcaatcgttatttaatttcacctgcttatgaatatggcaataaa
aaaaatgcccaagaagcgcacgaagccataagaccctcgaatgttgacgtgttctcagaa
cagttagaagacatggaaccagatgcgagaaagctgtatcagctgatatggcgtcagttt
gtggcctgccaaatgaccccggctcaatacgatgtgaccactttgatcgtagaggcaaaa
aactatcaattacgggctaaaggccggaccttgcggtttgatggctggactaaagtgatg
ccggctttgcgcaaaggagacgaggaggagactttgccaatcatagccgtcgggacttct
atgcatttagaaaaattgattcccagccaacatttcaccaagccgcctggccgctatagt
gaagcttctttggttaaggaattagaaaaacgcagcatagggcgcccttccacttatgcc
actattatttccactgttcaggagcgaggttatgtccgcattgaaaatcgccgtttctat
gcagaaaagatgggtgagatcgtcacaaatcgcttagaagaaaattttcgtgaattgatg
aattatgatttcaccgctcgtatggaaaatgcattagatcaaattgctcagcatcaagca
gaatggaaaaaggtgctggatgaatttttcagtgaatttagcgagcaactgaatatcgct
gaaaaagatccctcagaagggggaatgcgtccaaattcaatggtgataatggatattaat
tgccctgcttgcggccaaaaaatggggatacgtacagccagcacgggtgttttcctgggt
tgctcgagttacgcgttacctccgaaagaacgttgcaaaacgacgcttaatttgatctca
gaaaatgaaattttaaatcttcttgatggagatgaagcagagactaatgcattacgttcg
cgacgcaggtgtgaaaaatgcgaaactgcgatggacagttatctgcttgatacagcgcgg
aaattacatatttgtggtaacaaccctatctgtgatggatatcaaatggagcagggggag
tttcgtattaaagggtatgaaggtccgatcgtagaatgtgacaaatgtgcgcatgaaatg
catttaaaagtggggcgttttggtaaatatatgggatgtacgaatgaagaatgcaaaaat
acccgtaagattttgcgtaatggagaagtggctcccccgaaagaaaatcccgtgccttta
cctgaattactctgtgaaaaatctgatgcttattttgtgttgcgtgatggagcggcaggt
ttgtttcttgcggccaacacctttcctcgatcacgtgaaaccagagctccccgagtggaa
gaattacagcgttttaaagataggcttccagaaaaatggcattatctcgtcgaggcgccc
ctaaaagatacagaggggaataaaacattcctccgttttagtcgtaaaacgaaggagcag
tatatttcttctgaaaaatcaggaaaagcaacaggttggtgtgcattttacattgatggg
caatgggttgaaggtaaaaaaagacctcttgtaaagtcgtaa
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