Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_1920
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Entry
HDEF_1920 CDS
T00911
Symbol
sbcB
Name
(GenBank) exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HDEF_1920 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_1920 (sbcB)
Enzymes [BR:
hde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
HDEF_1920 (sbcB)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HDEF_1920 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HDEF_1920 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HDEF_1920 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Spt46
Motif
Other DBs
NCBI-ProteinID:
ACQ68508
UniProt:
C4K7G5
LinkDB
All DBs
Position
complement(1755084..1756556)
Genome browser
AA seq
490 aa
AA seq
DB search
MSQNLTFYIYDYETFGQHPGLDRPAQFAGIRTDLEFHPVEDPLVLYCSPAQDYLPDPEAV
MITGITPQKALSEGVNEARFAHQIHRVLSQPNTCILGYNNIRFDDEFSRHIFYRNFYDPY
AYSWKNGNSRWDLLDLTRACYALRPEGIIWPKNEQGLPSFKLEHLTKANSIKHTQAHDAL
SDVYATMALAKLLKSAQPRLFHYFYAHRSKHKINTLIHIGDMAPLVHVSGMFSPEKGHTS
WILPIAWHPDNQNAVIVCDLAGDITPLLSLKADMLRERLYTPRDQLGSECAQVPLKLVHI
NKCPILAPAKTLSRENAQRLGIDQQHCLKNLELLRRYPDIREKMVAIFDGQKPFPKVNNV
DAQLYDGFFNDFDRAEISTIQKTLPENLPTLKIVFQDPRLETLFFRFRARNYPETLSEKD
QQRWKAHFNTVLSPGIIKEYLLKLKEMLLEYEDNPEKQTLIHLLIQYANQQERYGEHVVS
QTGIEPVTSP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaacctgactttctatatttatgattatgaaactttcggtcaacaccccgga
ttagatcgccccgcccaatttgccggtattcgtaccgatctagagtttcatccggttgaa
gatcctttggtactgtattgctcaccggctcaagattatctccctgatcctgaagccgtc
atgataacagggatcacaccgcaaaaagctttatcagaaggcgttaatgaagcacggttt
gcacatcagattcatcgtgttttgagtcaacccaatacttgtattcttggttataacaac
attcgttttgatgacgaattcagcagacatattttttatcgtaatttttatgatccctat
gcgtacagttggaaaaacggtaattcgcgttgggatttgcttgatctgacgcgcgcttgt
tacgctttgcgtccagagggcatcatttggcctaaaaatgaacaaggcttgccttccttt
aaattggagcatttaacgaaggcaaactcgataaaacatactcaagctcatgatgcactt
tctgatgtttatgcgaccatggcattagcaaaattattaaaatcagctcaacctcgttta
tttcattatttttatgcacatcgcagcaaacataaaatcaacacattgattcatattggg
gatatggcccctttggtccatgtttcaggcatgtttagcccagaaaaaggccatacgagt
tggatattgcctattgcctggcatccagacaatcaaaatgcggtgattgtctgtgattta
gcgggggatatcacgcctttattatcattaaaggcggatatgcttcgggaacgattgtat
acacccagagatcaattaggcagtgaatgtgctcaagtccctttaaaattggtccatatc
aataaatgccccatattggcgccggccaaaaccctgtcaagggaaaatgcacagaggtta
ggtattgatcaacaacattgtttaaaaaatctagaactactgcggcgttatccagacatc
agagaaaagatggtggccatttttgacggtcaaaaaccttttccaaaagtgaataatgta
gacgcacaattatacgacggtttttttaatgatttcgatcgggccgagataagcaccatt
caaaaaacgttaccagagaatttgccgaccttgaaaatagtatttcaggatcctcgtttg
gaaaccctgttttttcgatttcgtgccagaaattatcctgaaactttgagtgaaaaagat
caacagcgctggaaagcgcatttcaacacggtgctcagccctggaatcatcaaagagtat
cttctcaaattaaaagagatgcttttagaatatgaagataatccagaaaaacaaaccttg
attcatttactgattcagtacgcaaatcagcaagaaagatacggtgaacatgtggtgtcc
cagactggaatcgaaccagtaactagcccttag
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