Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_2040
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Entry
HDEF_2040 CDS
T00911
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit, probably ATP hydrolase
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Pathway
hde03030
DNA replication
hde03430
Mismatch repair
hde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HDEF_2040 (holA)
03430 Mismatch repair
HDEF_2040 (holA)
03440 Homologous recombination
HDEF_2040 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hde03032
]
HDEF_2040 (holA)
03400 DNA repair and recombination proteins [BR:
hde03400
]
HDEF_2040 (holA)
Enzymes [BR:
hde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HDEF_2040 (holA)
DNA replication proteins [BR:
hde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HDEF_2040 (holA)
DNA repair and recombination proteins [BR:
hde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HDEF_2040 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delt_C
DNA_pol3_delta
DNA_pol3_delta_C
DUF1292
Motif
Other DBs
NCBI-ProteinID:
ACQ68612
UniProt:
C4K7R9
LinkDB
All DBs
Position
1869532..1870590
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AA seq
352 aa
AA seq
DB search
MKLIDAEQLQEHLKMNLSACYLLYGDEPLLLQESQDHIREAALRRNFTEHFTVTIEGDTE
WENIFRIFQELSLFSSRQTLLVIFPHKLLPASMKDRLGQLVQLLHQNILLMMRFHKLTKA
QENSPWYKALAPYACKINCEKPNHQRLPAWIKTRSKSLCFDIDLPCIERLCECYEGNILA
LSQLLTLLSLVYPNEQLSLPKIEPLLNNFAHFTPYQWSNALLEGKTERALLILKKLQQEE
HEPVILLRILQPDLLLLVTLKRAMAEVPLITLFQQHQVWQSRRTYFTQALQRLSLNVLKQ
GVHLFYQIEISLKQDYALSIWSELETLSLLLCGQPVLSLYPQSFTECFFDEP
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgattgatgctgagcaattacaggaacacctaaaaatgaatttgagtgcctgt
tatttgctctatggtgatgagcccttgctgctacaggaaagccaggatcatattcgtgaa
gcggcccttcggaggaattttacagagcattttaccgtgacgatagaaggggatacagaa
tgggagaatatctttcgtatttttcaggaattgagccttttttcttctcggcaaacgctt
ttggtgatttttccacacaaactgttacctgcttcaatgaaagacagattggggcaatta
gttcagttgttacatcaaaatattttactgatgatgaggtttcataagctgaccaaggca
caagaaaacagcccttggtataaggcgttagcgccttatgcgtgcaaaatcaattgtgaa
aaacccaatcaccaaaggctgccggcctggatcaaaacgcgaagtaaaagtttatgtttt
gatatagatttaccttgtattgagcggctttgtgaatgttatgaagggaatattctggcg
ctttcacagctgttaacccttctttcgttagtctatcccaacgagcaactcagcttgccg
aaaattgagcctctgttaaataattttgcacattttacgccataccagtggtcaaatgcc
ctgctggagggaaagacggaacgcgccttactgattttaaaaaaattgcaacaagaagaa
catgagcctgttattttactgagaatattacagcccgatctgttgttattggtgacttta
aaacgtgccatggcagaagtgcccctaataaccttgtttcagcagcatcaagtttggcaa
agccgtcgtacttattttactcaggcgctgcaacgtctttcactgaacgtattaaaacaa
ggggtgcatttgttttatcaaatagagatatctttaaagcaggattatgcactttcgata
tggtccgaactagagaccctttctttgttgttatgtgggcagcctgtgcttagcctctat
cctcagagttttactgaatgtttttttgatgagccttaa
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