Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_2107
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Entry
HDEF_2107 CDS
T00911
Symbol
rpoH
Name
(GenBank) sigma H (sigma 32) factor of RNA polymerase; transcription of heat shock and stress proteins
KO
K03089
RNA polymerase sigma-32 factor
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hde03021
]
HDEF_2107 (rpoH)
Transcription machinery [BR:
hde03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HDEF_2107 (rpoH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r1_2
HTH_10
2Fe-2S_thioredx
HTH_3
UCR_14kD
Motif
Other DBs
NCBI-ProteinID:
ACQ68672
UniProt:
C4K7X9
LinkDB
All DBs
Position
1929622..1930479
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AA seq
285 aa
AA seq
DB search
MMKEMPTLALMPQGSLEAYLRVSNSYAMLTEEEERALAERLHSHGDLNAARQLILSHLRF
VAHIARHYSGYGLPQADLIQEGNIGLMKAVRRFNPNMGVRLVSFAVHWIKAEIHEYVLRN
WRIVKVATTKAQRKLFFNLRKAKQRLGWFSQNEVDMVAKELGVTSKDVREMESRMSAQDM
AFELPLEDESREGQSPAPVMYLEDKNSDFADNIEKNNWGDHAADSLWVALKGLDERSQDI
IRARWLDDDNKSTLQELADRYGVSAERVRQLEKNAMKKLRLSIDI
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaagaaatgcccactctggctttaatgcctcagggcagcttggaagcttatctt
agagtatcgaattcttatgcgatgcttaccgaagaagaagaacgggctttagcggaacgt
cttcattctcacggcgatttaaatgccgccaggcagcttattttatctcatttacgtttt
gtcgcacacatcgctcgtcattactctggctacggtcttccgcaagctgacttgattcaa
gaaggcaatatcggcttgatgaaagcggttcgacgttttaacccgaacatgggtgtacgc
ctggtttcttttgcggttcactggatcaaggcagaaattcatgaatacgttttacgtaac
tggcgaatcgttaaagtggcgaccaccaaagctcaacgcaaacttttctttaatttgcgc
aaagcgaagcaacgtttgggctggtttagtcaaaacgaagttgacatggtggcgaaagaa
ttaggcgtgaccagtaaagatgttcgagaaatggaatcacgtatgtcagcacaggatatg
gcatttgaattaccattagaagatgaatcccgagagggtcaatcgccagcgcctgtgatg
tatctagaagataaaaattctgattttgcagataatatcgaaaaaaataattggggagat
catgcggctgacagtctatgggttgcattaaaaggtttggacgaacgtagccaggatatt
attcgcgcccgttggctggatgatgacaacaaatcgacgttacaggagttagctgatcgc
tatggtgtatctgctgaacgggttcgtcaattagaaaaaaatgcgatgaaaaaattacgt
ttatccatagacatttaa
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