Candidatus Hamiltonella defensa (Acyrthosiphon pisum): HDEF_2316
Help
Entry
HDEF_2316 CDS
T00911
Symbol
hepA
Name
(GenBank) RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
hde
Candidatus Hamiltonella defensa (Acyrthosiphon pisum)
Brite
KEGG Orthology (KO) [BR:
hde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hde03021
]
HDEF_2316 (hepA)
Transcription machinery [BR:
hde03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
HDEF_2316 (hepA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Katanin_con80
AAA_34
Motif
Other DBs
NCBI-ProteinID:
ACQ68853
UniProt:
C4K8Y4
LinkDB
All DBs
Position
2081962..2084895
Genome browser
AA seq
977 aa
AA seq
DB search
MIFSLGQRWVSDTETELGLGTITEIDLRMVTLAFPATGEKRRYAKQGSPITRVLFHPGDL
IQHQEGWSLQVNDVVEENHLISYIGTRTDTEKNTAVIRETFLNSKLTFRHPKNRLFSGQI
DNITHFALRFRALTHQSKQLRFLSQGLRGVRASLIPHQLHIAHEIGQRHAPRVLLADEVG
LGKTIEAGMILYQQLLSGRAERVLIVVPESLQHQWLVEMLRRFNLHFSLFDKNRYSESAC
DGMNPFETEQWVICSLDLIKEKETLLKDLVNADWDLLIVDEAHHLSWSEKNASPEYQAIE
QLADRVPGILFLTATPEQLGEESHFARLRLLDKNRFYDYNTFVDEQKNYRLIAEVVTLIL
ERKPLATEKIKQLTDFLTQTVDQTDLGPLLRLIHELGENFQKNKKTDRLKEEDQTQAQKF
IDFMIDCHGTSRVLFRNTRNSIKGFKKRKLHAIKLPFPSQYQTCIQALNTATSIQDKLYL
ERAYQKQADKEDWFHFDPRVTWLINFLLEYRDKKVLVICAHPRTALELEYILRTAQGIRS
AVFHEGLSLIERDRAAAYFSLIEKGAQVLLCSEIGSEGRNFQFSHDLVLFDLPLHPDLLE
QRIGRLDRIGQKNDIDIFVPYLENSAQSILLRWYHEGLNALEKSCCVGHKLYTSFEQRLK
KYLSAPDESEGFDQLIEECQKQAKAITLELEQGRDRLLELHSSGGESGEKYAQAILKQNN
DVDLIELAMNLFDIIGIHQEDQSEHMMLLIPSDHMLFPDFPGLSPEGNLITFDRETALVR
EDAQFLSWEHPIIRNGIDLILSSEIGSCSVAFLKNKTLPVGTLLIELIYVVEVQAKKSLQ
LARFLPPTPIRMLLDKKGNNLANQVAFEKMNAMLNKVDRHTAHQCIRAVQKEVQNILELS
KSIITKEADALIESAKKEADNELSCELNRLKALKMMNPNIRDDEIASLEKSRDHTLNHIS
QAVFRLDAIRLILVTHE
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgattttttctttgggccaacgctgggtaagcgatacagaaacggaactgggtttaggt
actattactgaaattgatctacgtatggtgaccctggcttttcctgcaacgggcgagaaa
aggcgttatgcgaagcagggttcacctattacacgggttttatttcatccgggtgatctg
attcagcatcaagagggttggtcactgcaagtaaatgatgtggttgaagaaaaccatttg
atcagctacatcggcacaagaacagatacagaaaaaaatacagcggtgatccgtgaaaca
tttttaaacagcaaactgacttttcgtcatcccaaaaatcgtcttttttcagggcaaatc
gataatattacgcattttgctttgcgttttcgggcactcacacatcagagcaaacagctt
cggtttttgtctcagggtttacgaggcgttcgtgccagtctgatccctcatcaattacat
attgcgcatgaaataggacagcgccacgcgccacgtgttcttttggccgatgaagtaggt
ctgggcaaaacaatagaagcaggcatgatcctgtatcaacagctcttgtcaggccgagct
gaacgtgtcttgattgtcgtgcctgaaagtctgcaacatcaatggctggtggaaatgttg
cgccgctttaatctgcatttttctcttttcgacaaaaatcgatattctgaatccgcatgt
gacggtatgaatccatttgaaacagagcaatgggtgatttgttcgttagatttgattaaa
gaaaaggaaacgctactcaaggatcttgtcaatgcagattgggatctattgattgtagat
gaagcccatcatttgtcctggagtgaaaaaaacgccagcccagaataccaggctattgaa
cagctggcggatcgtgttccgggcatactgtttttaacggctaccccagaacaacttggt
gaagagagtcatttcgctcgattacgtttactggataaaaatcgtttttatgattacaac
acatttgttgatgagcaaaaaaattatcgtctgattgcagaggtagtgacgcttattctg
gaaagaaaacctctggcgacagaaaaaataaagcaattaaccgattttttaactcaaact
gttgatcaaacagatctcgggcctttgttaaggctcatccatgagcttggagaaaatttt
caaaaaaacaagaaaacagaccgtcttaaagaggaagaccaaacccaggcccaaaaattc
attgattttatgatagattgccatggaaccagccgtgttttatttcggaatacccgaaat
agcatcaagggctttaaaaaaagaaaattacatgccattaagctgcctttcccctctcag
tatcaaacctgtattcaagcattgaatacagcgacttccattcaagataagctctatcta
gaaagggcgtatcaaaaacaggcagataaagaagattggttccactttgatcctcgagtc
acatggctaataaactttttactcgaatatcgcgataaaaaagtactggtcatatgtgct
catccacgcacagcattagagctggaatatatattaagaacagcccaagggattcgttcg
gctgtttttcatgaaggtttatcattgattgaacgggatcgcgcagcggcttatttttct
ttaattgaaaaaggagcccaagttcttctgtgctcagaaataggatcagagggccgcaat
tttcaattttcacatgacctggtgctctttgatctgcctcttcatccagatttactggaa
caaagaatagggcgccttgatagaattggtcagaaaaatgacattgatatttttgttccc
tatctcgaaaacagtgcccaaagcattttactgcgttggtatcacgaaggcttgaatgcc
ttagaaaaaagctgctgcgttgggcataaactctataccagttttgagcaaagattaaaa
aaatatttgagtgcaccagatgaatcagaaggtttcgatcaattgatcgaggaatgtcag
aaacaggcaaaagccatcacattagaattagagcaagggcgcgatcgtttgcttgagttg
cattcaagtggaggagaaagcggggaaaaatacgcgcaagcgattctaaaacagaataat
gatgttgatttaatcgaattggccatgaatctgtttgatattattggtattcatcaagag
gatcagagcgagcatatgatgctattgatcccctctgatcatatgcttttccctgatttt
cctggtttatcaccggagggaaatttaatcacgtttgatcgcgagaccgctttggtaaga
gaggatgcacagtttctcagctgggagcatcccatcattcgaaatggaatcgatttgatt
ttatctagtgaaattggcagttgttctgttgcttttttaaaaaataaaaccttgcctgta
ggcactctactgatagagttgatttatgtcgtcgaggtgcaagccaaaaaatctttgcaa
ctggcgcgttttttacctcccacgccgatacgcatgttactggataaaaaaggaaataat
ttagcgaatcaagtggcgtttgagaagatgaatgccatgctcaataaagttgatcgtcat
accgctcatcaatgtattagagctgtacaaaaagaagtacagaatatattggaattatca
aaatccatcatcactaaagaggccgatgccttgattgagtcagcaaaaaaagaagctgat
aatgaattaagctgtgaattaaaccgattaaaagcattaaaaatgatgaaccctaatatt
cgggatgatgaaatagcgtctctggaaaaaagccgtgatcacactctcaaccatattagt
caagctgtctttcgccttgatgccattcgtttaattttggtcacacatgaataa
DBGET
integrated database retrieval system
