Halalkaliarchaeum desulfuricum: AArcSl_1735
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Entry
AArcSl_1735 CDS
T06283
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
hdf
Halalkaliarchaeum desulfuricum
Brite
KEGG Orthology (KO) [BR:
hdf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hdf03016
]
AArcSl_1735 (ligT)
Enzymes [BR:
hdf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
AArcSl_1735 (ligT)
Transfer RNA biogenesis [BR:
hdf03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
AArcSl_1735 (ligT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AUX09363
UniProt:
A0A343TJU1
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All DBs
Position
1758968..1759555
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AA seq
195 aa
AA seq
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MRLFFAVDLPDRLADDVAAVQDRLRDAEGLRFTDPAQAHLTLKFLGDVDTDRVEELETAA
REAISNAEVEHEDGTVAPVEPFEAEVGGLGVFPSVEYISVVWAGFRTGEAELTALHEALE
AETTALGFDPEDHEFTPHVTLARMDDARGKEIVQEAVTETDPTIGRFRVEDVRLKESILT
PEGPEYDTVARFELS
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgagactcttcttcgccgtcgacctcccggatcgactggccgacgacgtcgccgccgtc
caggaccggctgcgcgatgcggagggactcaggttcaccgacccggcgcaggcgcacctc
acgctgaagttcctcggcgacgtcgacaccgaccgcgtcgaggaactcgaaacggccgcc
cgcgaggcgatctcgaacgccgaagtcgaacacgaggacggcaccgtcgcacccgtcgaa
ccgttcgaagccgaggtgggtgggctcggcgtgttcccctcggtcgagtacataagcgtc
gtgtgggccggattccggacgggcgaggccgaactgaccgcgctccacgaggcgctggag
gcggagacgaccgcgctcggcttcgatcccgaggaccacgagttcaccccgcacgtcacg
ctcgcgcggatggacgacgcccgggggaaggagatcgtccaggaggcagtcacggaaact
gatccgacgatcggccgatttcgggtcgaggacgtccgcctgaaggaaagcatcctcaca
cccgaggggccggagtacgacacggtagcgcggttcgagctctcgtag
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