Halalkaliarchaeum desulfuricum: AArcSl_2858
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Entry
AArcSl_2858 CDS
T06283
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hdf
Halalkaliarchaeum desulfuricum
Pathway
hdf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hdf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AArcSl_2858 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hdf03019
]
AArcSl_2858 (rnj)
Messenger RNA biogenesis [BR:
hdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AArcSl_2858 (rnj)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
AUX10473
UniProt:
A0A343TN01
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Position
2906397..2907743
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AA seq
448 aa
AA seq
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MEIEIATIGGFEEVGRQMTAVRAGEDVVVFDMGLNLSQVLIHDNVETEQMHSLDLIDMGA
IPDDRVMSDLEGDVQAIVPTHGHLDHIGAISKLAHRYNAPVVATPYTIELVKQQVKGENK
FSVDNDLVKMDAGGTMSIGPQCELEFVNVSHSVIDAINPVLHTPEGSVVYGLDKRIDHNP
VIGDPIDMERFREIGREDNGVLCYIEDCTNAGHKGRTPSESVARTHLKDTLQSIEDYDGG
IVATTFSSHIARVKSLVEFAEEIGRKPVLLGRSMEKYSGTAERLDFVEFPGDLGMYGHRK
SVDRTFKRIMKEGKEKFLPVVTGHQGEPRAMLTRMARGETPFELDDGDKVIFSARVIPEP
TNEGQRYQAERLLKMQGARIYDEIHVSGHLREEGHYQMLDALQPQHVIPGHQDLQGFAPY
VDLAESQGYAVGRDLHVTRNGNMITLVE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagaaatcgcaacaatcggcggattcgaagaggtcgggcgccagatgacggcg
gtccgtgcgggcgaggacgtcgtcgtcttcgacatgggcctgaacctctcgcaggtactg
atccacgacaacgtggagaccgaacagatgcacagtctcgatctgatagacatgggcgcg
atcccggacgaccgggtgatgtccgacctcgagggggacgtacaggcgatcgtgccgaca
cacggccacctcgaccacatcggcgccatctcgaagctcgctcaccggtacaacgcgccg
gtggtggcaacaccctacacgatcgagctggtgaaacagcaggtaaaaggcgaaaacaag
ttctccgtcgacaacgacctcgtaaagatggatgccggcgggacgatgtcgatcggaccg
cagtgcgaactcgaattcgtcaacgtcagccactcggtaatcgacgccatcaatccggtg
ctccacacgccggaagggtcggtcgtctacgggctcgacaagcgcatcgaccacaacccg
gtgatcggcgacccgatcgacatggagcggttccgcgagatcggccgcgaggacaacggc
gtgctctgttacatcgaagactgcaccaacgccggacacaagggtcggacgccgagcgaa
tcggtcgccaggacccacctgaaggacacgctccagtccatcgaggactacgacggcggc
atcgtggcgacgacgttctcgagtcacatcgcccgggtgaagtcgctcgtcgagttcgcc
gaggaaatcggccgcaaacccgtgctgctcggtcgatcgatggagaagtactccggcacc
gcagaacggctggacttcgtcgagttccccggcgatctcgggatgtacggtcaccgcaag
agcgtcgaccggacgttcaagcggatcatgaaggagggcaaagagaagttcctccccgtg
gtgaccggacaccagggagagccgcgcgcgatgctcacccggatggcccgcggcgagaca
cccttcgagctcgacgacggcgacaaggtcatcttctcggcgcgggtaatccccgagccg
accaacgagggacagcgctaccaggccgaacgcctgctgaagatgcagggtgcccggatc
tacgacgagatccacgtctcgggacaccttcgagaggagggtcactaccagatgctcgac
gccctccagccccagcacgtcatccccggccaccaggacctccagggctttgctccctac
gtggacctggcggagtcacaggggtacgcggtcggccgtgaccttcacgtgaccagaaac
gggaacatgatcacactggtggaatga
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