Pikeienuella piscinae: G5B40_02210
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Entry
G5B40_02210 CDS
T06458
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
hdh
Pikeienuella piscinae
Pathway
hdh02020
Two-component system
hdh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hdh00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
G5B40_02210 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G5B40_02210 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hdh03021
]
G5B40_02210 (rpoN)
Transcription machinery [BR:
hdh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G5B40_02210 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QIE54358
UniProt:
A0A7L5BUI2
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All DBs
Position
complement(475774..477264)
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AA seq
496 aa
AA seq
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MQIGPRVELKQSQQLVMTPQLQQAIRLLQMSRLDTVDYLAQEVEKNPVLAIDDGGEMASS
ADTAREEAIDRAIARQDIGEAENGFETGRENLYEAAESYSVGGPSGAMSGGGTGRDGALA
DAGAQADFEETAAQKISLRDHLLPQIGASAAPRGTRALAALLVDELDEAGYLRVDIEALG
ARLGAHSGLAAEAVALLQSCEPTGIGARDLKECLTLQLKERDRFDPAMATLIDRLDDLAA
ARLAPLRAACGVDEEDLREMIAEIRRLEPRPGAAFTTGVAASVVPEVLIRRNTLGGWTVE
VNPDAMPKVLLDTAYVNELGASGSVEVKAYLTTCRQNADWLIRALEQRAQTILKVATEIV
RRQSGFFEQGVAALSPMTLKLVADEIGMHESTVSRVTANKFLACERGVFELKFFFTQGIA
SVDGGGAVSAAAVRHQIKSLIEKEDPSRSLSDDRIVTLLKQSGVDVARRTVAKYRETMNI
PSSAQRKRMKAAALGR
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcgggccgcgcgttgaactgaaacaaagtcagcagctggtgatgacgccccag
ctacagcaggcgatccgactcttgcagatgtcccgtctcgacacagtcgattatctcgcc
caggaggtcgagaaaaacccggttctcgcgatcgacgatggcggagagatggcctccagc
gccgacacggcgcgggaggaggcgatcgaccgcgccatcgcccgccaggatatcggggag
gcggagaacggctttgagacagggcgcgaaaacctgtacgaggcggcggagtcgtattcc
gtcggcgggccgtcgggcgcgatgtccggcggcgggactggccgcgacggagcgctggcg
gacgccggcgctcaggcggatttcgaggagaccgcggcccagaaaatctctctgcgcgac
catcttctgccgcagatcggcgcgagcgccgcgccgcgcgggacacgggcgctcgccgca
ttgctggtcgatgaactagacgaagccggctatctccgcgtcgatatcgaggcgctcggc
gcccggctcggcgcgcattccggactcgccgcggaggcggtcgcgctgcttcagagttgt
gagccgaccggaattggcgcgcgcgacctgaaggaatgcctgacgctgcaactgaaggaa
cgcgaccggttcgacccagcgatggcgacgttgatcgatcgcctcgatgatctcgcggcg
gcgcggctggcgccgctccgcgcggcttgcggggtggatgaggaggatctgcgcgagatg
atcgcggagatccgccggctcgagccgcggccgggcgccgccttcacgaccggcgtcgcc
gcgtctgtggttcccgaggttctgatccggcgcaacacgctcggcggctggaccgtcgag
gtcaatccggatgcgatgcctaaggtcctgctcgacaccgcctatgtcaacgaactcggc
gcatccggctcggtcgaggtgaaagcctatctgacaacatgccggcagaacgcggattgg
ctgatccgggcgctcgaacagcgcgcgcaaaccatactgaaagtggcgacggagatcgtc
cgccgacagtccggattcttcgaacagggcgtcgcggcgctttcaccgatgacgttgaag
ctggttgcggatgaaatcggcatgcacgaatcaaccgtaagtcgagtcaccgccaataag
ttcctagcttgcgaacgcggagtctttgaactgaaattctttttcactcaagggattgcc
agcgtggacggcggcggcgcggtctccgccgcggcagttcgacaccagatcaagtctctg
attgaaaaggaggatccatcaagatctctctcggacgaccggattgtcactctactgaaa
caaagcggcgtcgatgttgcgcgccggacggtcgcgaaataccgtgagacaatgaatatc
ccgtcatcggcgcagcgaaaacggatgaaggcggcagccttgggacgttga
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