Pikeienuella piscinae: G5B40_20520
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Entry
G5B40_20520 CDS
T06458
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
hdh
Pikeienuella piscinae
Brite
KEGG Orthology (KO) [BR:
hdh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hdh03019
]
G5B40_20520 (hrpB)
Enzymes [BR:
hdh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G5B40_20520 (hrpB)
Messenger RNA biogenesis [BR:
hdh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G5B40_20520 (hrpB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
AAA_22
AAA_30
AAA_19
ResIII
AAA_16
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QIE57626
UniProt:
A0A7M3T6J5
LinkDB
All DBs
Position
4296638..4299103
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AA seq
821 aa
AA seq
DB search
MTAPFDPAATGLPAAEALPALLAALAGGGCVVLTAPPGAGKTTLVPLALLGAEWANGKIL
MLEPRRLAARAAAERMAALLGEAVGETVGYRVRGESRPGARIEVLTEGILTRMIQSDPAL
DGVSALIFDEFHERSLHADLGLALAWEARGALRPDLRIVVMSATLDAGPVAALLGGAPVV
SASGRVFPVETRWLEAPVQRRIEDEAAAAARRALDEAEGDVLVFLPGAREIGRAARLLEG
ATADIRPLHGALGLRAQRAALAPAPEGRRKIVLASAIAETSLTVEGVRVVIDAGLARRAR
FDPGAGMARLVTERATKAEAEQRRGRAGRLAPGLCLRLWTRGEEGAMAEFAPPEIMVADL
APLALELANWGAAPGDLAFLTPPPAGAMAAARGLLAALWALDSAGRITAHGRALAAAPTH
PRLAHMLLSAPESERGLAAALAALVEARDPMMGAGADAALWLAGLATPERAGPAAGALRA
IRAEAERLARRHHTRAAWRGAAGPLLARAFPDRIAMRRPGAGARGEARYLLSGGKGAFLP
ADDALAGEAFLVAVDLDGDATEARIRLAASIGRGEIGWIFDERIAWREECRWSRRERRVI
ARRRLRLGALALEERPWRGAPEAELAAAMIEGLRDLGLDALPWSDGARRLTARVEWARAR
GAAAPAMSAAALEAELEDWIGPYLGGCRRAEDLAKLDLLALLNARLDHDGRREVDRVAPE
AFIAPDGGACRIDYEGAQPSIAVRLQALFGLDRHPAAGGEALSVVLLSPAGRPVQVTADL
PGFWRSSYADVRKEMRGRYPKHPWPEDPLAAAPTRRAKPRG
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcccctttcgaccccgccgccaccggcttgcccgccgccgaggccttgcccgcg
ctccttgcggcgctggcgggcgggggctgcgtggtgctgacggcgccgccgggggcgggg
aagacgacgctggttccgctcgcgctgctgggggcggagtgggcgaacggcaagatcctg
atgctggagccgcgccggctggccgcacgggcggcggcggagcggatggcggcgctgctg
ggcgaggcggtcggcgagacggtcggctacagggtgcggggggagtcgcggccgggggcg
cggatcgaggttctgaccgaggggattctcacgcggatgatccagtcggacccggcgctg
gacggcgtctcggcgctgatcttcgacgagtttcacgagcggtcgctccacgccgatctc
gggctggcgctggcgtgggaggcgcggggcgcgctccggccggatctgcggatcgtggtg
atgtcggcgacgctggacgcgggaccggtggcggcgctgttgggcggggcgccggtggtt
tcggcctcggggcgggtgtttccggtggagacgcgctggctggaggcgccggttcagcgg
cgaatcgaggacgaagcggcggcggcggcgcgacgggcgctggatgaggccgagggcgat
gtcctggtctttctgcccggcgcgcgggagatcggccgggcggcgcggctgctggagggg
gcgacggcggatatccgcccgctccacggcgcgctggggctcagggcgcagcgggcggcg
ctggccccggcgccggagggtcggcgcaagatcgtgctggcgagcgcgatcgcggagacc
tcgctgaccgtcgaaggcgtccgggtcgtgatcgacgccgggctcgcgaggcgggcgcgg
ttcgaccccggcgcgggcatggcgcggctggtcaccgagcgggcgacgaaggccgaggcg
gagcagcggcgggggcgcgccgggcggctggcgccggggctctgcctgcggctttggacg
aggggcgaggagggcgcgatggcggaattcgcgccgcccgagatcatggtcgcggacctt
gcgccgctggcgctggagctggcgaactggggcgcggcgccgggcgatctggcgttcctg
acgccgccgccggccggcgcgatggcggcggcgcgcgggctgctggcggccctgtgggct
ctcgacagcgcggggcggatcaccgcgcatggccgggcgctggcggcggcgccgacgcac
ccgcggctggcgcatatgctcctgagcgcgcccgaatcggagcgcgggctggcggcggcg
ctggcggccctggtcgaggcgcgcgacccgatgatgggcgcgggggcggacgcggcgctg
tggctggcggggctggcgacgccggagcgggccgggccggcggccggggcgcttcgcgcg
atccgggcggaggcggagcggctggcgcggcgacatcatacgcgggcggcgtggcggggc
gcggccgggccgctgctggcgcgggcctttcccgaccggatcgccatgcgccggccggga
gccggggcgcgcggcgaggcgcgctatctcctctccggcggcaagggggccttcctgccg
gcggatgacgcgctggcgggagaggcgtttctggtcgccgtcgatctcgacggcgatgcg
acggaggcgcggatccggctggcggcgtcgatcgggcgcggcgagatcgggtggatattc
gacgagcggatcgcctggcgggaagaatgccgttggtcgcgccgcgagcgccgcgtgatc
gcgcggcggcggctgaggctgggcgcgctggcgttggaggagcggccgtggcgcggggcg
ccggaagcggaactggctgcggcgatgatcgaagggctgcgcgatcttgggctggacgcg
ctgccctggtcggacggcgcgcggcggttgacggcgcgggtggagtgggcgcgggcgcgg
ggcgcggcggcgccggcgatgagcgcggcggcgctggaagcggagctggaggactggatc
ggcccgtatctgggcggatgccggagggcggaggacctcgcgaagctcgatctgctcgcg
ctgttgaacgcgcgattggaccatgacggacggcgtgaggtggatcgggtggcgccggag
gcgttcatcgccccggatggcggggcctgccggatcgactacgagggcgcgcagccctct
atcgccgtgcggctccaggcgctcttcgggctggaccggcatccggcggcggggggcgag
gcgctgagcgtcgtcttgctgtcgccggcgggacggccggtgcaggtgacggcggacctg
ccgggattctggcgttcgagctacgccgatgtgcgaaaggagatgcgcgggcgctacccg
aaacacccctggccggaagacccgctcgcggcggcgccgacgcgccgggcgaagccgcgc
gggtga
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