Hartmannibacter diazotrophicus: HDIA_0032
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Entry
HDIA_0032 CDS
T05217
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
hdi
Hartmannibacter diazotrophicus
Brite
KEGG Orthology (KO) [BR:
hdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdi03400
]
HDIA_0032
Enzymes [BR:
hdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HDIA_0032
DNA repair and recombination proteins [BR:
hdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
HDIA_0032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
SON53573
UniProt:
A0A2C9D018
LinkDB
All DBs
Position
1:38533..41697
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AA seq
1054 aa
AA seq
DB search
MATTSEQDRDDEPLPPRVFSIDPAVPFLPTLVEALLAGDLVPGFVLADDPLALADVTILV
PTRRAARVLRGEFVRALGGRAALLPVIRPIGDIDEEGDAFRADDDLDLPPVIGEAERLLS
MARLVMRWREGIAPERELTPHGTPIRIPASPADAIHLARDLLALLDQAANEEIDWAKLSG
LVPEDHAAYWQLTLTFLDIATKAWPEHLAERGLIEPGERHRQMVLRRIDQMTRAGGGPVI
AAGSTGSIPTTAKLLAAIARLPNGAVVLPGLDTHLDDETFGLVAPEIGPGVPSHPQAALA
HLVRVIGIERGEVRELGVPEPSLAMRGQIVSEALRPAETTDRWPAFAGDMPPKTRTDALD
GLSIMVARQPAEEALAIALCLRETVEDSEKVAALVTADRELARRVCLELQRFGLAVEDSA
GEALLDTPPAILARHVADVVLGGFAPDDLLALLKHPLASFGLPRVVAREAARAIEIAVLR
GPRLAAGSRPLVEAIDRALADFEGKEARIHPVLRMLGPEAVREGRDLAQRVVEAFAPLEA
MVGGHDLPLDDLLRAHVEVLRAVASDETGSDARLYTGPAGEELASFLAGQLETHARAFVI
DAALYPAVFEALMVGRQVHRPVAAGARVHIWGQLEARLMQADRVVLGGLVEGVWPARTDT
GPWLSRPMRSGLDFGPPERRIGLAAHDFQMRFGTRDLILSYSAKKEGAPTVASRWLQRVT
AVLGPEQTEELRQRGERWLGVARRIDDGPRSPRPARASALPPVEARPKALNVTDIETWVR
DPYALYARRILRFEPLDPLGRMPDFATRGTVIHDALAEFASDGGPHVGEEGLRRLIAIGE
RYFAPLRLRPELHALWWPRFLEMARFLVESFEEAKGETTRRIAECKGSLVMAIDAEDFTL
NGRADRIDVGLGGEAVIVDFKTGAAPSKKQLVTLMKPQMPLEGFMLREGAFEGLGRMEAT
ALVHVILKGLSGADKIDLFDGEKAKKGEEAKTLADIVGESARQLAGLVRAYRDPERAYPS
RPRVLLSRQTGGAYDHLARVAEWQAAGGEGEGEE
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgacaagcgaacaggacagggacgacgagccccttccgccgcgcgtcttctcc
atcgatccggcggttccctttctgccgacgctggtcgaggcgctgctggccggcgatctc
gtgccgggctttgttctcgccgacgatcctctggcgctggccgatgtcacgatcctcgtg
ccgacccgccgtgccgcccgtgtcctgcgtggtgagttcgttcgggctctcggcggccgg
gccgcgctgctgcctgtcatccggcccatcggcgacattgatgaggaaggcgacgccttt
cgcgccgacgacgatctcgatttgccgccggtcatcggcgaggccgagcgcctcctgtcg
atggcgcggctcgtcatgcgttggcgcgagggcatcgcgccggagcgcgaactgacgccg
cacggcacgccgatccgcattcccgcgtcgcccgccgatgccattcatctggcccgcgat
cttctcgccctgctcgaccaggcggcgaatgaggagatcgactgggcgaagctgtcgggc
ctcgtgcccgaagaccacgccgcctactggcagctgacgctcaccttcctcgacatcgca
acgaaggcctggccggagcatcttgccgaacgcggcctgatcgagccgggcgagcgtcac
cgccagatggtcctccgccgcatcgaccagatgaccagggctggcggcggcccggtgatc
gcggcgggttcgaccggctccattccgacgacggcgaagctgcttgcggccattgcccgc
ctgccgaacggcgccgtcgtcctgccgggtctcgatacgcatctcgacgacgagaccttc
ggccttgtcgcgccggagattgggccgggcgttccaagccacccgcaggcggcgctggct
catctggtccgtgtgatcgggatcgagagaggtgaggttcgcgaactcggagtgccggaa
ccgtcgctcgccatgcgcggccagatcgtctcagaggcgctgcgccctgccgagacgacc
gaccgctggccggcctttgccggggacatgcctccgaaaacgcggaccgatgcgctcgac
ggcctgtccatcatggtcgcccggcaaccggccgaggaggcgctcgccatcgcgctctgc
ctgcgcgagaccgtcgaggactccgaaaaggtcgccgccctcgtcacggcggaccgggaa
ctcgcccgccgcgtctgtctggaactgcagcgtttcggtctcgcggtggaggattcggcc
ggcgaggcgctgctcgacaccccgcccgcgatccttgcccgtcatgtcgccgacgtcgtc
cttggcggatttgcgccggacgatctgcttgcgcttttgaagcacccgctggcctccttc
ggcctgccgcgcgtcgtggcccgcgaagcggcgcgggcaatcgagatcgccgtgctgcgc
ggcccgcgccttgccgccggaagcaggcctctggtggaagcgattgatcgcgcgctggcg
gacttcgagggcaaggaggctcgcatccatccggtgctgaggatgctcggtcccgaggcg
gtgcgtgagggtcgcgatttggcccaacgggtcgtcgaggccttcgcgccgctggaagcg
atggttggcggccacgatctgccgctcgacgatctgctgcgcgcccatgtcgaggtgttg
cgcgcggtcgcaagcgacgagaccggctccgacgcccgcctctataccggacctgccggt
gaggaattggcctccttcctcgcaggccaactcgaaacccatgcccgcgccttcgtgatc
gatgcggcgctctatccggccgtcttcgaggcgctgatggtcgggcggcaggtgcaccgg
cctgtggccgccggcgcgcgggtccacatctggggccaactggaagcgcgcctgatgcag
gcggaccgcgtcgtgctcggcggcctcgtcgagggcgtctggccggcgcgcaccgacacc
gggccctggctgtcgcgcccaatgcggtcgggcctcgacttcgggccgccggagcggcgc
atcggccttgccgcccatgatttccagatgcgcttcggcacgcgtgatctgatcctttct
tattcggctaagaaagagggcgcgccgacggtcgcgtcccgctggcttcagcgcgtcacc
gccgttcttgggcccgagcagacggaagagctgcgacagcgcggcgaacgctggctcggg
gtcgcccgccgcatcgacgacggcccgcgcagcccacgccccgctcgcgcctccgccttg
ccccctgtcgaggcccgcccgaaagcgctcaacgtcaccgatatcgagacctgggtgcgc
gacccctacgcgctttacgcccggcgtattttgagattcgagccgctcgatcccctcggc
cggatgccggactttgcaacgcgtggcacggtcattcacgacgcgttggccgaatttgcc
agcgacggcggcccgcatgtcggcgaggagggccttcgccgtctcattgccatcggcgag
cgctatttcgcgccgctacgcctgcggccggaactccatgccctctggtggccgcgcttc
ttggaaatggcgcgcttccttgtcgaaagcttcgaggaggcgaaaggcgagacgacgcgg
cgcatcgccgaatgcaagggcagtctcgtcatggcgattgacgcggaggacttcacgctc
aacggccgcgccgaccggatcgacgtcggcctcggcggcgaggcggtgatcgtcgatttc
aagaccggcgcggcgccgtccaagaagcagcttgtcaccctgatgaagccgcagatgccg
ctggaaggcttcatgctgcgcgaaggcgccttcgaagggcttggccgcatggaggccacg
gcccttgtccacgtgatcctgaaagggctttccggcgcggacaagatcgacctcttcgac
ggcgagaaggcgaagaagggcgaggaggcaaagacgctcgccgacatcgtgggtgaatcc
gcccgtcagctggccggcctcgtgagggcctaccgcgatccggaacgggcttatccctcg
cgtccgcgcgttctgttgagccggcaaaccggtggcgcatacgaccacctcgctcgcgtc
gccgaatggcaggccgccggcggcgaaggggagggcgaggaatga
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