Hartmannibacter diazotrophicus: HDIA_0531
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Entry
HDIA_0531 CDS
T05217
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
hdi
Hartmannibacter diazotrophicus
Pathway
hdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HDIA_0531 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdi03400
]
HDIA_0531 (recD)
Enzymes [BR:
hdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HDIA_0531 (recD)
DNA repair and recombination proteins [BR:
hdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HDIA_0531 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
Viral_helicase1
HHH_5
AAA_11
AAA_29
PIF1
AAA_22
Helicase_RecD
AAA_28
nSTAND3
HHH
RsgA_GTPase
UvrD-helicase
AAA_23
HHH_2
T2SSE
ABC_tran
UvrD_C
AAA_18
SLFN-g3_helicase
AAA_16
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
SON54072
UniProt:
A0A2C9D175
LinkDB
All DBs
Position
1:complement(574139..576361)
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AA seq
740 aa
AA seq
DB search
MSTSEPSPAPETQDARITGTIEHVTFHNAENGFLVVKLRVPGQRTAITLVGHAPSIVRGE
QVDAIGEWTTDRTHGLQFRARQLMTKPPTAGEAVARYLGSGMVPGIGPALARRIVEKFGP
KAIEVIEKEPMRLLDVPGIGKAAAQRIARGWNDQKALRDLLEFLAERGVPTVHAMRIHKQ
FGAKAREVVESDPFRLAREVRGIDFTGADAIAQRFGLDTTAPARLRAGLSHALEDAASDG
HTGLPLADLIPRAAKLLAVDEDTVAEAVAGAKESGEVVEAEVEGVTCLFSRRLAEAESFI
AERLAVLREGKPAWSDVNLDKAAKDFERRAKVSLSASQREALALVATGKVSVVTGGPGVG
KTTILDALLGLVGGNRRIALAAPTGRAARRMSDQTGREAKTIHRLLEIDAATGDFRRAAS
NPLEVDLVVIDEASMVDTGLMAALVAAIPDEAALILVGDVDQLPSVGPGQVLGDIIASQT
VPVARLTEIHRQAKSSRIVVNAHRINHGELPETTPAGETGDFYIIPMSSPEDGIAKLKEV
VSRRIPGRFGFDPMREVQVLTPMQKGPLGARNLNVELAGLLNPRAGTRIERGGLSYGVGD
RVMQVENDYDHDVFNGDMGRIVSIDREDDEIVVDFDGRVVTYSSNGLDALAPAYAVTIHK
AQGSEYPAIVIPLSGQHYPMLARNLIYTAVTRARQLVVLIAEPRALEIAVSGRNARRRWT
RLQALLTGNTGNAEQETAAT
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttccgagccgagtcccgcccccgagacgcaagacgcccgtatcacgggaacg
atcgagcacgtcaccttccacaatgcggaaaacggcttcctggtcgtcaagctgcgtgtg
ccggggcagcgcaccgcgatcacgctcgtcggccatgcgccttccatcgtgcgcggcgag
caggtggacgccatcggcgaatggaccaccgaccgcacccacgggctgcagtttcgcgcg
cgccaactcatgaccaagccgccgaccgccggcgaggccgtcgcgcgctatctcgggtcc
ggcatggtgcccggcatcggaccggcgcttgcccgcaggatcgtcgagaaattcggtccg
aaggcgatcgaggtgatcgagaaggagccgatgcgccttctcgacgtgccgggcatcggc
aaggcggccgctcagcgcatcgcgcgcggatggaacgaccagaaggccctgcgcgatctt
ctggaattccttgccgaacgcggcgttccgacggtccacgccatgcgcatccacaagcag
ttcggcgcgaaggcgcgcgaggtggtcgaaagcgatcccttccgccttgcccgtgaggtg
cgcggcatcgacttcaccggcgccgacgccatcgcccagcgcttcggcctcgacacgacg
gcgccggcccgcctgcgcgccgggctgagccatgcgctggaggacgcggccagcgacggc
cacaccggcctgccgctcgccgacctcatcccccgggcggccaagcttcttgccgtcgac
gaggacaccgtcgccgaggcggtggccggcgccaaggaaagcggcgaggtcgtcgaagcc
gaggtcgagggcgtcacctgcctcttctcgcgccggctcgccgaggccgaaagcttcatc
gccgagcgcctagccgtcttgcgggagggcaaaccggcctggtcggacgtcaacctcgac
aaggccgccaaggacttcgagcgccgggccaaggtgtcgttgtcggcttcgcagcgcgag
gcgctcgcccttgtcgcaacgggcaaggtctcggtggtcacgggcggacccggcgtcggc
aagacgacgatcctcgacgctttgctcgggctcgtcggcggcaatcggcgtatcgcgctg
gccgcacccacgggcagggccgcgcgccggatgagcgaccagaccgggcgcgaggcgaaa
acgatccaccggctcctggagatcgacgccgcgaccggcgacttccggcgcgctgcctcc
aatccgctggaggtcgatctcgtcgtcatcgacgaggcgagcatggtcgacaccgggctg
atggccgcgctcgtcgccgcgatcccggacgaggcggcgctgatcctcgtcggcgacgtc
gaccagttgccctccgtcggtcccggacaggtgctcggcgatatcatcgcgtcgcagacc
gtgccggtcgcgcgcctcaccgaaattcaccgtcaggccaagtcgagccgcatcgtcgtc
aacgcccaccgcatcaaccacggcgagctgccggaaacgacgccggcgggcgaaaccggc
gacttctacatcatcccgatgtcgagcccggaggacgggatcgccaagctgaaagaagtc
gtcagccggcgcatcccgggccgcttcggcttcgatcccatgcgcgaggtgcaggtgctg
acgccgatgcagaagggaccgctcggcgctcgcaacctcaatgtggaactggccggcctg
ctcaatccgcgtgccggaacgcgcatcgaacgcggcgggctttcctacggggtcggcgac
cgggtgatgcaggtggagaacgactacgaccacgacgtcttcaacggcgacatgggccgc
atcgtttccatcgaccgcgaggacgacgagatcgtcgtcgatttcgacgggcgggtcgtg
acctattcgagcaacggactggacgcgctggcgccggcctatgcggtgacgatccacaag
gcgcaaggctcggaatacccggccatcgtcatcccgctgtccggccagcactatccgatg
ctggcccgcaacctgatctacacggcggtgacgcgcgcacggcagcttgtcgttctcatc
gccgaaccaagggcgctggaaattgccgtttccggacgcaatgcccgccgcagatggacc
cggcttcaggcgcttctgactggaaacacaggcaacgccgagcaagagactgccgcgacg
tga
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