Hartmannibacter diazotrophicus: HDIA_1393
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Entry
HDIA_1393 CDS
T05217
Symbol
dnaE1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hdi
Hartmannibacter diazotrophicus
Pathway
hdi03030
DNA replication
hdi03430
Mismatch repair
hdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HDIA_1393 (dnaE1)
03430 Mismatch repair
HDIA_1393 (dnaE1)
03440 Homologous recombination
HDIA_1393 (dnaE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hdi03032
]
HDIA_1393 (dnaE1)
03400 DNA repair and recombination proteins [BR:
hdi03400
]
HDIA_1393 (dnaE1)
Enzymes [BR:
hdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HDIA_1393 (dnaE1)
DNA replication proteins [BR:
hdi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HDIA_1393 (dnaE1)
DNA repair and recombination proteins [BR:
hdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HDIA_1393 (dnaE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
SON54934
UniProt:
A0A2C9D3T3
LinkDB
All DBs
Position
1:1502146..1505598
Genome browser
AA seq
1150 aa
AA seq
DB search
MAALDFVHLRVHSAYSLLEGALPLGKVIDLALKDNQPAVAMTDTGNLFGALEFSEKASGA
GLQPIIGCALAIDFHDEAIDPRKVNAGPVLYSLLLIAATEQGFNNLVTLVSKSFLGPEPG
LPAHVPIEALEGLGEGIICLTGGPALGPIDRAISAGHPALADDRLERLSALFGDRLYVEI
QRHGLDSERMVEAGLIDLAYARGLPLVATNECFFPSRESFEAHDALIAISEGRVLAEDDR
RRLTPDHYFKTRAEMVEVFKDLPEALENTVEIARRCQFRPRKRKPILPRFAGADVADVAE
AERAEAGELERQAREGLADRLDRHGMAPGLTREDYEKRLEFELSIITGMKFPGYFLIVAD
FIKWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPMRFALLFERFLNPERVSMPDFDIDF
CQDRRDEVIRYVQEKYGREQVAQIITFGTLQARAVLRDVGRVLQMPYGQVDRLCKLVPQN
PANPVTLAQAITDEPRLREARREEEIVDRLLDMALKLEGLYRHASTHAAGIVIGDRPLDR
LVPLYRDPRSDMPVTQYNMKWVESAGLVKFDFLGLKTLTVLQKAVNLIERRGVKIDLSAL
PLDDPKTYGLLQRGETVGVFQLESMGMRKAIADIKPDCFEDIIALVALYRPGPMANIPVY
GARKHGHEKPDYIHPKLEPVLKETYGIIVYQEQVMQIAQILSGYSLGEADLLRRAMGKKI
KAEMDVQRVRFVEGAQKDGLDKAEANTIFDLLAKFADYGFNKSHAAAYALVAYQTAYLKA
NYPVEFMAASMTLDMGNTDKLNDFRREAMRLGFEVLPPCVNRSDVEFEVSEDRILYALAA
IKGVGRQAVEHLVEVRGERKFSDLSDFAARIGARMLNKRMMESLVAAGAFDALESNRARM
FSGIEQVLGAATDRAEREASGQNELFGGAAEVEPVRLGKIPEWLPEEKLQREHAAIGFYL
SAHPLDAYKAVLSRLRVQTFSEFSAAVKRGAGAGRLAGTIVSRQERKTKSGNKMGILGIS
DPTGQFEAVIFSEGLNHYREVLEPGRSVIILVGAEDRPEGISIRIDSAEPLDEAAARLQH
SLRVFLRSAEPVDSLRNQLAPSGDGDVSLIVLLEEGKREVEVKLPGRYRVSPQIAGALKA
IPGVVDVELA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggcggcactcgatttcgtgcatcttcgcgttcactccgcctattcgctcctcgagggc
gcattgccgctcggcaaggtcatcgatctggccctcaaggacaaccagccggccgtggcg
atgaccgacacgggtaatctcttcggcgcgctcgaattctccgagaaggcgtccggagcg
ggattgcagccgatcatcggttgtgcgctcgccatcgattttcacgatgaggcgatcgac
ccgcgcaaggtcaacgccggtccggttctctattcgctgctgctgatcgcggccacggag
caggggttcaacaacctcgtcacgctcgtcagcaaatccttcctcggaccggagccgggg
ctgccggcgcatgttccgatcgaggcccttgaggggcttggcgagggaatcatctgcctg
accggcgggcctgccctggggcccattgatcgcgcgatctcggccgggcatccggcgctt
gccgacgaccggctggaacggctgtccgcgctcttcggcgaccggctttatgtcgaaatc
cagcgccacggtctcgacagcgagcggatggtcgaggccggcctcatcgatctggcttat
gcgcgcgggttgccgctcgtcgccaccaacgagtgcttctttccaagccgagaaagcttc
gaggcccatgacgccctgatcgcgatttccgagggtcgggtgctggccgaggacgatcgc
cggcggttgacgccggaccactatttcaagacgcgtgccgagatggtggaggtcttcaag
gatctgcccgaggcgttggagaacacggtcgagatcgcccgccgctgccagtttcgcccc
aggaagcgcaagccgatcctgccgcgttttgccggcgcggacgttgccgacgtggccgag
gcggaacgggcggaggcgggcgaactggaacgtcaggcccgcgagggtcttgccgaccgc
cttgatcgtcatggcatggcgccgggcctgacgcgggaggactatgaaaagcggctcgaa
ttcgagctgtcgatcatcaccggaatgaagtttccgggctacttcctcatcgttgccgac
ttcatcaagtgggccaaggcccacggcattccggtcgggccggggcgcgggtcgggcgcg
ggctcgctcgtcgcctattcgctgacgatcactgatcttgacccgatgcgcttcgcgctg
ctcttcgagcgcttcctgaacccggaacgcgtctcgatgccggacttcgacatcgacttc
tgccaggatcgccgcgacgaggtgatccgctacgtgcaggagaaatacggccgcgagcag
gttgcccagatcatcaccttcggtacgctgcaggcccgcgccgtgctgcgcgacgtcggc
cgcgtcttgcagatgccctatggccaggtcgatcggctctgcaagctggtgccgcagaac
ccggccaatcccgtgacgctggcgcaggcgatcaccgacgagccgcgcctgcgcgaggcc
cggcgcgaggaagagatcgtcgatcgcctgctcgacatggcgctgaagctggaagggcta
taccgccacgcctcgacccacgccgccggtatcgtgatcggcgaccggccgcttgaccgg
ctggtgccgctctaccgcgacccgcgctccgacatgcccgtcacccagtacaacatgaaa
tgggtggaaagcgccgggctggtgaagttcgacttcctcgggctcaagactttgaccgtc
cttcagaaggcggtgaacctcatcgagcggcgcggcgtgaagatcgacctgtcggctctg
ccgctcgacgatccgaagacctatggcctcctgcagcgcggcgagacggtcggcgtgttc
cagctggaaagcatgggcatgcgcaaggccattgccgacatcaagccggactgcttcgag
gacatcatcgccctcgttgcgctctatcgtccgggtccgatggcgaacatccccgtttat
ggcgcgcgcaagcacggccacgagaagccggactacatccatcccaagctggagccggtg
ctgaaagagacctacggcatcatcgtctaccaggaacaggtgatgcagattgcgcagatc
ctgtccggctattcgctcggcgaggccgatctcctgcgccgcgccatgggcaagaagatc
aaggccgagatggacgtccagcgcgtgcgcttcgtcgagggtgcgcaaaaggacgggctc
gacaaggccgaggcgaacacgatcttcgaccttctggcgaaattcgctgactacggcttc
aacaagtcacacgcggcagcttacgcgctcgtcgcctaccagacggcctacctgaaggcg
aactacccggtcgaattcatggccgcctccatgacgctcgacatgggcaacaccgacaag
ctcaacgacttccgccgtgaggcgatgcggctcggcttcgaggtgctgccgccttgcgtc
aaccgctcggacgtcgagttcgaggtgagcgaggatcgcattctctatgctctcgctgcg
attaagggggtcggccggcaggcggtcgagcatctggtcgaggtgcggggcgagcggaag
ttcagcgacctctcggactttgccgcccggatcggcgcccggatgctcaacaagcggatg
atggaaagccttgtggctgccggcgccttcgatgcgctcgaaagcaaccgcgcgcgcatg
ttctccggcatcgagcaggttctgggcgcggcgacagaccgggccgagcgcgaagcgagt
ggccagaacgagctcttcggcggagcggccgaggtcgagccggtgcggctcggcaagatt
cccgaatggctgccggaagaaaagctgcagcgtgagcatgcggcgatcggcttctatctc
tcggcccatccgcttgatgcctacaaggccgtgctgtctcgcctgcgcgtgcagaccttt
tccgaattctccgccgcggtgaagcgcggggcgggggcagggcgccttgccgggacgatc
gtttcccgtcaggagcgcaagaccaagtccggcaacaagatgggcatcctcggcatttcc
gatccgaccggccagttcgaggcggtgattttctccgagggtctcaaccactatcgcgag
gttctggagcccggccgctccgtcatcatcctcgtcggggccgaggatcggccggaaggc
atcagcatccgcatcgattccgccgagccgctggatgaggccgccgcgcggctccagcac
agcctgcgcgtcttcctgcgcagcgctgaaccggtcgacagcctgcgcaatcagcttgcc
ccgtccggcgacggcgacgtgtcgctgatcgtgcttctggaagagggcaagcgcgaggtg
gaggtcaagctgcccggccgctatcgcgtctcgccgcagatcgccggcgcgctgaaggcg
atcccgggcgtcgtcgacgtcgaactcgcttga
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