Hartmannibacter diazotrophicus: HDIA_1508
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Entry
HDIA_1508 CDS
T05217
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hdi
Hartmannibacter diazotrophicus
Pathway
hdi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hdi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HDIA_1508 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hdi03021
]
HDIA_1508 (rpoB)
03400 DNA repair and recombination proteins [BR:
hdi03400
]
HDIA_1508 (rpoB)
Enzymes [BR:
hdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HDIA_1508 (rpoB)
Transcription machinery [BR:
hdi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HDIA_1508 (rpoB)
DNA repair and recombination proteins [BR:
hdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HDIA_1508 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
SON55049
UniProt:
A0A2C9D4D8
LinkDB
All DBs
Position
1:1628862..1633001
Genome browser
AA seq
1379 aa
AA seq
DB search
MAQTFNGRRRIRKFFGDIREVAEMPNLIEVQKASYDQFLLIDEPEGGRPDEGLQSVFKSV
FPISDFAGTSFLEFVRYEFEAPKYDVDECRQRGMTFSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RIIPYRGSWLDIEFDAKDIVHARIDRRRKIPVTSLLFALGLDGEEILDTFYNKIPYTRSA
DGWRMPYDPARMKGMKITGDLIDADSGEVVLEAGRKLTARAARQLADKGLKALKLTDEDL
EGSYLGEDLVNLQTGEIYVEAGEEITPKILQQIVDAGFEELSILDIDHVNTGGYIRNTLA
ADKNETREEALFDIYRVMRPGEPPTIDTAEAMFKSLFFDAERYDLSAVGRVKMNMRLDLK
CEDTVRILRKEDILSVIQTLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLRME
RAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYR
KVVDSRVTDEVVYLSAMEEAKYTVAQANAELDDNNGFANEFVICRHAGEVMQTPRERVDL
MDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEAIVARDS
GAAIGARRAGIVDQVDATRIVIRATREADPSKSGVDIYRLMKFQRSNQDTCINQRPLVRV
GDVVEKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILLSEKIVSDDVFTSIHI
EEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILIGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGVEKDERAMAIEREEI
ERLAKDRDDEQAILDRNIYGRLAEMLEGKAGVAGPKGFRKDTAISAEIRAEYPRSQWWQF
AVADDQLMSEIEALRKQYDESRKRLEQRFIDKVEKLQRGDELPPGVMKMVKVFVAVKRKI
QPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETHLGWA
CAGMGKKIGKMLEAYQQSGEIAELRNQVVDLYQGSPKTEKVGEFDDESIVTLAGELKRGV
SIATPVFDGAREPDVVEMLERAGLKNSGQSTLYDGRTGETFDRQVTVGYIYMLKLHHLVD
DKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAG
RTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELTSTKDQGNQDLPDQPADAAE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcccagacgttcaacggccgcaggcggattcgtaaattcttcggcgatatccgtgaa
gtcgcagaaatgccaaacctcatcgaggtgcagaaggcctcctacgaccagttcctgttg
atcgatgaacccgaaggcgggcgccccgatgaggggcttcagtccgtttttaagtcggtg
ttcccgatttcggattttgccggtacgtctttcctcgagttcgtgcgttacgagttcgag
gcgcccaagtatgacgtcgacgagtgccgccagcgcggcatgaccttctccgcgccgctc
aaggtgacgctgcgtctgatcgtgttcgatgtcgacgaggataccggcgccaagtccgtc
aaggacatcaaggagcaggatgtctacatgggcgacatgccgctcatgaccgacaacggc
accttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcaccgctcgccgggc
gtcttcttcgatcacgacaagggcaagacccactcctcgggcaagctcctctttgccgcg
cgcatcatcccctatcgtggttcgtggctcgacatcgagtttgatgccaaggacatcgtg
cacgcccgtatcgaccggcgccgcaagatcccggtgacgagcctccttttcgccctcggt
ctcgacggcgaggaaatcctcgacaccttctacaacaagatcccctacacccgcagcgcg
gacggctggcgcatgccgtatgatccggcgcgcatgaagggcatgaagatcaccggcgac
ctgatcgacgccgacagcggcgaagtcgtgctggaagccggccgcaagctgaccgcgcgc
gccgcacgccagcttgccgacaagggcctcaaggcgctgaagctcaccgacgaggatctc
gaaggctcgtatcttggcgaggatctcgtcaacctgcagacgggcgagatctatgtcgag
gccggcgaggaaatcacgccgaagatcctgcagcagatcgtcgacgccggcttcgaggaa
ctttccatcctcgatatcgaccacgtcaacacgggtggctacatccgcaacacgctggcc
gccgacaagaacgagacccgcgaggaagccctcttcgacatctatcgggtcatgcgcccg
ggcgagccgccgaccatcgacacggccgaggcgatgttcaagtcgctcttcttcgacgcc
gagcgttacgacctgtcggccgtcggtcgcgtcaagatgaacatgcgccttgatctcaag
tgcgaggacacggtccgcatcctgcgcaaggaggacatcctttcggtcatccagacgctg
gtcgaactgcgtgacggcaagggcgagatcgacgacatcgacaatctcggcaaccgccgc
gtccgctcggtcggcgagctgatggagaaccagtaccgcgtcggcctcctgcgcatggag
cgcgcgatcaaggagcgcatgtcctcggtcgacatcgacacggtcatgccgcaggacctg
atcaacgccaagccggcggctgccgccgtgcgcgagttcttcgggtcttcgcagctctcg
cagttcatggaccagaccaacccgctctctgagatcacgcacaagcgtcgtctctcggct
cttggcccgggcggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtgcatccg
acgcactatggtcgtatctgcccgatcgagacgccggaaggcccgaacatcggtctgatc
aactcgctggcgaccttcgcccgcgtgaacaagtacggcttcatcgagagcccctaccgc
aaggtggtggacagccgcgtcaccgacgaggtcgtctacctctcggcgatggaagaggcc
aagtacacggtggcgcaggcgaacgccgagctcgacgacaacaacggctttgccaacgag
ttcgtgatctgtcgtcacgccggcgaggtcatgcagaccccgcgcgagcgcgtcgacctc
atggacgtgtcgccgaagcagcttgtctcggtcgccgcggcgctcatcccgttccttgag
aacgacgacgccaaccgcgctctgatgggctcgaacatgcagcgccaggcggtgccgctc
gttcgcgccgaggcgcctttcgtcggcaccggcatggaagccatcgtcgctcgcgactct
ggcgcggccatcggtgcgcgccgcgccggtatcgtcgatcaggtggacgccacccgtatc
gtcatccgcgcgacccgcgaggccgatccgtcaaagtccggcgtcgacatctaccgcctg
atgaagttccagcgctccaaccaggacacctgcatcaaccagcgtccgctggtgcgtgtc
ggcgacgtggtggagaagggcgacatcatcgctgacggtccgtcgaccgatctcggcgat
ctggcgctcggccggaacgtgctcgtcgcgttcatgccgtggaacggctacaacttcgag
gactccatcctcctctccgagaagatcgtctccgacgacgtcttcacctcgatccacatc
gaggaattcgaggtgatggcccgtgacacgaagctgggtccggaggaaatcacgcgtgac
attccgaacgtctcggaagaagcgctgaagaacctcgacgaagccggcatcgtctacatc
ggcgctgaagtgcagccgggtgacatcctgatcggcaagatcacgccgaagggcgaaagc
ccgatgacgccggaagaaaagctcctgcgcgccatcttcggcgagaaggcctccgacgtt
cgtgacacctcgctgcgtctgcccccgggcgtcgccggcacggtcgtcgaagtgcgcgtc
ttcaaccgccatggtgtggagaaggacgagcgcgcgatggcgatcgagcgcgaggagatc
gagcgtctcgccaaggaccgcgacgacgagcaggcgatcctcgaccgcaacatctacggc
cgtcttgccgagatgctggaaggcaaggccggcgttgccggtccgaagggcttccgcaag
gacacggccatttcggccgagattcgcgccgagtatccgcgctcgcagtggtggcagttc
gccgttgccgacgatcagctcatgagcgagatcgaggccctgcgcaagcagtacgacgaa
agccgcaagcgtcttgaacagcgcttcatcgacaaggtggagaagctgcagcgcggtgac
gagctgcctccgggcgtgatgaagatggtcaaggtcttcgtcgcggtgaagcgcaagatc
cagccgggcgacaagatggccggccgtcacggcaacaagggcgtggtctcgcgcattgtt
cccgtggaggacatgcctttcctggaggacggcacccacgtcgacatcgtgctcaacccg
ctgggtgtgccgagccgcatgaacgtcggccagattctggagacgcacctcggctgggcc
tgcgccggcatgggcaagaagatcggcaagatgctggaggcttaccagcagtccggcgag
atcgccgagctgcgcaaccaggttgtcgacctctaccagggcagcccgaagacggagaag
gtcggcgagttcgatgacgagtcgatcgtcacgctggccggtgagctgaagcgcggcgtg
tccatcgcgacgccggtcttcgacggtgcccgcgagccggacgttgtcgagatgcttgag
cgggccggcctgaagaactccggccagtcgaccctctacgacggccgcacgggtgagacc
ttcgatcgtcaggtgactgtcggctacatctacatgctgaagctgcaccacctcgtcgac
gacaagatccacgcccgttcgatcggtccttactcgctggtcacccagcagccgctcggc
ggcaaggcccagttcggcggtcagcgcttcggcgaaatggaggtctgggcgctggaggct
tacggcgcggcctacacgctgcaggagatgctcaccgtcaagtcggacgacgtggcgggc
cgtaccaaggtctacgaggccatcgtgcgcggcgacgacaccttcgaggccggcattccg
gagagcttcaacgtgctcgtcaaggaaatgcgctcgctgggcctcaacgtcgagctgacc
agcaccaaggatcagggcaaccaggatctgcccgatcagccagcggacgcggcggagtaa
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integrated database retrieval system
