Hartmannibacter diazotrophicus: HDIA_1509
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Entry
HDIA_1509 CDS
T05217
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hdi
Hartmannibacter diazotrophicus
Pathway
hdi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hdi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HDIA_1509 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hdi03021
]
HDIA_1509 (rpoC)
03400 DNA repair and recombination proteins [BR:
hdi03400
]
HDIA_1509 (rpoC)
Enzymes [BR:
hdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HDIA_1509 (rpoC)
Transcription machinery [BR:
hdi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HDIA_1509 (rpoC)
DNA repair and recombination proteins [BR:
hdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HDIA_1509 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
SON55050
UniProt:
A0A2C9D4A9
LinkDB
All DBs
Position
1:1633105..1637316
Genome browser
AA seq
1403 aa
AA seq
DB search
MNQEVMNLFNPQAPVQTFDQIKISLASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFENYVVTEPGLTPLKLHQLLSEEEYITAQDQYGEDSFTA
FIGAEAIREILSSMNLAKLADQLRQEIIESTSELKPKKLAKRVKIIEAFMASGNKPEWMI
MSVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGFSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDIVLGLYYLSIMAEGEPGEGMAFSDIGELQHALD
AKVVTMHTKIRGRFKTVDEEGNPVSKIYETTPGRMLIGQLLPKHHNVPFDVCNQLMTKKQ
VSAMIDAVYRHCGQKESVIFCDRIMQLGFTNACRAGISFGKDDMVIPPNKWDIVEETRSL
TKEFEQQYNDGLITQGEKYNKVVDAWGKCSARLADEMMAAIQAVKKDENGRQVQMNSIYM
MSHSGARGSREQMRQLAAMRGLMAKPSGEIIETPIISNFKEGLSVMEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDSIISEVDCGSTGGLSMQAIVDSGQIVATLGHRILGRTA
AEDIIHPSTGELLVPNGKLIEEPDVDLVEKSGIQSVKIRSVLTCDTKIGVCAKCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVVDTSFMESTFEGEIRIRNRNV
VRDSSGKLIAMGRNMSVAIIDVAGIERSTHRIAYGSRLHVDDGDKVKRGQRIAEWDPYTR
PVLTEVDGIVGFEDLVEGASVSETTDEATGITKRVVIDWRGSARTSDLKPSMIIKGPDGK
IAKPPRGGEARYQLSVDSILSVEPGAQVSAGDVLARIPLESAKTRDITGGLPRVAELFEA
RRPKDHAIIAEIDGTIRFGRDYKNKRRVIIEPHEDGQDTREYLIPKTKHFHLQEGDIVEK
GDYIVDGNPAPHDILAIKGVEALAAYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEI
IEGGETDMMPGEQFDRIEVEETNEKAVTEGKRPATFNPVLLGITKASLQTRSFISAASFQ
ETTRVLTEAAVNGKADTLEGLKENVIVGRLIPAGTGGLMNRIRAVAKRRDELIVEERRKS
ALGEAGEKPMQTEASEQPAPDAA
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaacctttttaatccgcaggctccggtccagacattcgatcag
atcaagatttcgctggcgagccccgagaagatcctctcgtggtcctacggcgagatcaag
aagcccgagaccatcaactaccgcacgttcaagccggagcgtgacggtctcttctgcgcg
cgcatcttcggcccgatcaaggactacgaatgtctttgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgaaaagtgcggtgtggaagtcacgctgtcgcgcgtgcgccgc
gagcgcatgggccacatcgaactggccgcccccgtcgcccacatctggttcctgaagtcg
ctgccctcgcgcatcggcctgctgctcgacatgacgctcaaggatcttgagcgcattctc
tatttcgagaactatgtcgtcaccgagccgggcctcaccccgctgaagctgcaccagctt
ctcagcgaggaggagtacatcaccgcgcaggaccagtatggcgaggacagcttcaccgcc
ttcatcggcgccgaggcgatccgcgagatcctctcgtcgatgaaccttgccaagctcgcc
gaccagcttcgccaggagatcattgaatcgacctccgaactgaagccgaagaagcttgcc
aagcgcgtcaagatcatcgaggccttcatggcctccggcaacaagccggaatggatgatc
atgagcgtcgtgccggtcatcccgccggatctgcgcccgctcgtcccgctggacggcggc
cgcttcgcgacgtccgacctcaacgatctctaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcgcctcatcgagctgcgcgcgccggatatcatcatccgcaacgaaaagcgcatg
cttcaggagtccgttgacgcgctgttcgacaacggccgccgtggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcagcgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactactccggccgttcggtcatcgtggtcggc
ccggagctgaagctgcaccagtgcggcctgccgaagaagatggcgcttgagctcttcaag
cccttcatctactcgcgcctcgacgccaagggcttctcctccacggtgaagcaggccaag
aagctcgtggagaaggagcgtccggaagtctgggatattctcgacgaggtcatccgcgag
catccggtgatgctgaaccgcgccccgacgctgcaccgcctcggtatccaggccttcgag
ccgacgctgatcgagggcaaggcgatccagctgcacccgctcgtctgctcggccttcaat
gccgacttcgacggcgaccagatggctgtccacgtgccgctgtcgctcgaagcgcagctt
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcacccggcgaacggcgcgccg
atcatcgtgccgtcgcaggacatcgttctgggtctctactacctgtcgatcatggccgag
ggcgagccgggcgagggcatggccttctccgacatcggcgagctgcagcacgctctcgac
gccaaggtcgtgaccatgcacaccaagatccgcggccgcttcaagaccgtggacgaggaa
ggcaatccggtctcgaagatctacgagacgacccccggccgcatgctcatcggccagctt
ctgccgaagcaccacaacgtgcccttcgacgtgtgcaaccagctcatgacgaagaagcag
gtctcggcgatgatcgacgccgtctaccgccattgcggccagaaggaatcggtcatcttc
tgtgaccgcatcatgcagctgggcttcactaacgcctgccgcgccggcatctccttcggc
aaggacgacatggtcatcccgccgaacaagtgggatatcgtcgaggagacccgttcgctg
acgaaggaattcgagcagcagtacaacgacggtctgatcacccaaggcgagaagtacaac
aaggtcgtcgacgcctggggcaagtgctccgcgcgccttgccgacgagatgatggccgcg
attcaggccgtcaagaaggacgagaacggccgtcaggtccagatgaactcgatctacatg
atgagccactcgggtgcccgtggttcgcgcgagcagatgcgtcagctcgccgccatgcgc
ggccttatggccaagccgtcgggcgagatcatcgagaccccgatcatctcgaacttcaag
gaaggcctgtcggtgatggagtacttcaactccacccacggcgcccgtaagggtctggcc
gacaccgctctgaagaccgcgaactcgggttacctgacgcgtcgtctcgtcgacgttgcc
caggactcgatcatctcggaagtcgattgcggttcgaccggcggcctcagcatgcaggcg
atcgtcgacagcggccagatcgtggcgaccctcggtcaccgcattcttggccgtacggcg
gcggaggacatcatccatccgtccaccggtgagcttctggtgccgaacggcaagctcatc
gaggagccggatgtggacctcgtcgagaagtcgggcatccagtcggttaagatccgctcg
gtgctgacttgcgacaccaagatcggcgtctgcgccaagtgctacggtcgtgaccttgca
cgcggcacgcccgtcaacatgggtgaagcggtgggcgtcatcgcggctcagtcgatcggt
gaaccgggtacccagctcaccatgcgtaccttccacatcggtggtgcggcgcaggtggtc
gacacctcgttcatggaatcgaccttcgagggcgagatccgcatccgcaaccgcaacgtc
gtgcgcgactccagcggcaagctcattgccatgggccgcaacatgtcggtggcgatcatc
gatgtcgcaggcatcgagcggtcgacccaccgcatcgcctatggctcgcgcctgcatgtg
gacgacggcgacaaggtcaagcgcggtcagcgtatcgccgagtgggacccctacacccgc
ccggtgctgaccgaagtcgacggcatcgtcggcttcgaggatctggtggaaggcgcgtcc
gtgtcggaaacgaccgacgaggcgaccggtatcaccaagcgtgtcgtcatcgactggcgc
ggttcggcccgtacgtccgacctcaagccgtcgatgatcatcaaggggcccgatggcaag
atcgccaagccgccgcgtggcggcgaggcgcgctatcagctgtccgtcgactcgatcctg
tcggtcgagccgggcgcgcaggtgagcgccggcgacgtgcttgcacgtattccgctggaa
agcgccaagacccgcgacatcaccggcggtctgccgcgcgtggctgaactcttcgaggct
cgtcgcccgaaggatcacgccatcatcgcggagatcgacggcacgatccgcttcggccgc
gactacaagaacaagcgccgcgtcatcatcgagccgcatgaggacggacaggacacccgt
gagtacctgatcccgaagaccaagcacttccaccttcaggaaggcgacatcgtggagaag
ggcgactacatcgtcgacggcaaccccgcgccgcacgacatcctggcgatcaagggcgtg
gaggcgctggccgcctatctcgtcaacgagatccaggaagtctaccgactgcagggcgtg
gtcatcaacgacaagcacatcgaggtgatcgtccgccagatgctccagaaggtggagatc
atcgagggcggcgagaccgacatgatgccgggcgagcagttcgaccgtatcgaggtggaa
gagaccaacgagaaggcggtcaccgagggcaagcgtccggcgacgttcaacccggtgctg
ctcggcatcacgaaggcgtcgctccagacgcgttccttcatctccgccgcctccttccag
gagacgacgcgcgtcctcaccgaggccgcggtcaacggcaaggcggatacgctggaaggc
ctcaaggagaacgtcatcgtcggtcgcctcatcccggccggtacgggcggtctcatgaac
cgcatccgcgcggttgccaagcgccgcgacgagttgatcgtcgaggagcgtcgcaagtcg
gcgctcggcgaggccggcgaaaagccgatgcagaccgaggccagcgagcagccggcgcct
gacgccgcctga
DBGET
integrated database retrieval system
