Hartmannibacter diazotrophicus: HDIA_2900
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Entry
HDIA_2900 CDS
T05217
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hdi
Hartmannibacter diazotrophicus
Pathway
hdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDIA_2900 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hdi03019
]
HDIA_2900 (rne)
03009 Ribosome biogenesis [BR:
hdi03009
]
HDIA_2900 (rne)
Enzymes [BR:
hdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HDIA_2900 (rne)
Messenger RNA biogenesis [BR:
hdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HDIA_2900 (rne)
Ribosome biogenesis [BR:
hdi03009
]
Prokaryotic type
rRNA processing factors
HDIA_2900 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
SON56441
UniProt:
A0A2C9D9M2
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All DBs
Position
1:3114902..3117658
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AA seq
918 aa
AA seq
DB search
MSNKMLIDATHPEETRVVVVKGQRVEEFDFESANRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLDAEAEEAREEAESQNNRRGRRPRGRSRSRD
NDAAANGKNTDESTVAASSDEPVVREAADEAEERSFDQGEGVETFEAGAGTVSDDTANDE
ATGDADDTASGDAASDDEGEAVRARRDDQHDDDDHDEDDASDEEDSVESVGAEDALEELP
ERRKPRMRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGRGGG
ISRKITNPADRKRLKEVAQELEVPDGMGIILRTAGASRTKAEIKRDFEYLLRLWENVRDY
TLKSSAPMLVYEEGSLVKRSIRDLYNKDITQVLVSGDEAYREAKDFMRMLMPSHAKNVQP
YRDTAPIFARYSVEPQLDAMFSPQVTLRSGGYLVINQTEALVSIDVNSGRSTREHNIEDT
AYQTNMEAAEEVARQLRLRDLAGLIVIDFIDMEEPRNNKAVERKLKDCLKNDRARIQVGR
ISHFGLMEMSRQRIRTGVLEGSTEVCPHCLGAGIVRSTESVALHVLRSLEDQLLKGVTHH
LTIRTRTAVALYILNQKRKHLGELEERFGLTITISADEHMAGQHYVLERGEIITNPIPAP
QFIHPDTVYPDDELDEVEEIEEVEESREEQDDGDDESRGRNGKRRRRRRRRGGDQPPAQA
QRSQEAETDEGSSDDEDEGDTAEAQAGDDGQGENGRRRSRRRGRRGGRRRGNGTGTDANA
ADGESDKAADEMTANGDEDAEAVEVSAAPEAEVQSESPAELPNEAEATVEVHAETEVEAE
SQPDAEEGTEPQETAAAEEPATETVTEEAPEESREAELETVDAGAPASSTSSGAASAPEP
EDDDRPKRSGWWQRRSFF
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacaagatgctgatagatgccacgcacccggaggaaacccgggtcgtggtcgtg
aaaggacagcgtgtcgaggaatttgatttcgagtccgcgaaccgtaagcagttaagaggc
aatatctacctggccaaggtgacgagggtcgaaccttcgcttcaggctgcttttgtggaa
tatggcggcaaccgccacgggttcctcgccttctccgaaatccatccggactattatcag
atcccggtcgcggaccgacaggcgctgctcgacgccgaggccgaggaagcccgcgaggaa
gccgaatcccagaacaatcgccgtggccgccggccgcgtggccgcagccgtagccgtgac
aacgacgcggcggcgaacggcaagaataccgacgagtcgaccgttgccgccagcagcgac
gagccggtcgtcagggaagccgccgacgaggcggaagaaaggtccttcgatcagggcgaa
ggtgtcgagaccttcgaagccggtgcggggaccgtttcggacgatacggcgaacgatgag
gccacgggtgacgcggatgacaccgcatccggcgatgccgcgtccgacgacgagggcgag
gccgtgcgtgcccgccgcgacgaccagcatgacgacgacgaccacgacgaggacgacgcc
tccgacgaggaggacagcgtcgagtccgtcggcgccgaggatgcgctcgaggaattgccc
gagcgccgcaagccgcgcatgcggcagtacaagattcaggaagtcatcaagcgccgccag
gtgctgctggtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacc
tatctctcgctcgccggccgctattcggtcctgatgcccaacacgggccgtggaggcggc
atctcgcgcaagatcaccaaccccgccgaccgcaagcgcctcaaggaagtcgcccaggaa
ctggaggttccggacggcatggggatcatcctgcgcacggccggcgccagccggacgaag
gcggagatcaagcgcgacttcgaatatctcctgcgtctttgggagaacgtgcgcgactat
accttgaagtcgagcgcgccgatgctcgtctacgaggagggctcgctggtcaagcggtcg
atccgcgacctctacaacaaggacatcacccaggtccttgtgtccggcgacgaagcctat
cgcgaggccaaggacttcatgcgcatgctcatgccgagccatgccaagaacgtccagccc
taccgcgacacggcgccgatcttcgcgcgctattcggtcgagccgcagctcgacgcgatg
ttctcgccccaggtcacgctgcgctccggcggctatctggtgatcaaccagaccgaggcg
ctcgtctccatcgacgtgaactcgggccggtcgacgcgcgagcacaacatcgaggacacg
gcctaccagacgaacatggaagcggccgaggaagtggcccgccagcttcgcctgcgcgac
cttgccggcctcatcgtcatcgacttcatcgacatggaggagccgcgcaacaacaaggcc
gtcgagcgcaagctcaaggactgcctgaagaacgatcgcgcgcgcatccaggtcggccgc
atctcgcacttcggcctcatggagatgagccgccagcgcatccgcaccggcgttcttgaa
ggctccaccgaggtctgcccgcactgccttggcgccggcatcgtccgctccacggaaagc
gtcgcgctgcatgtgctgcgctcgctggaagaccagttgctgaagggcgtgacccatcac
ctgaccatccgcacgcgcaccgcggtcgccctctacatcctcaaccagaagcgcaagcat
ctgggcgagctcgaggagcgcttcggcctgacgatcacgatctccgcggacgagcacatg
gccggccagcattatgtgctggaacgcggcgagatcatcaccaacccgatccctgccccg
cagttcattcatcccgataccgtctatccggatgacgagctggacgaggtcgaggagatc
gaagaggtcgaggagagccgcgaggaacaggacgacggcgacgacgaaagccgtggccgc
aacggcaagcgccgtcggcgccggcgtcggcggggcggcgatcagccccctgcccaggcc
cagcgttcgcaggaagccgagaccgacgagggctcctcggacgatgaggacgaaggcgac
accgccgaggctcaggccggcgacgatggccagggcgagaatgggcggcgacgctcgcgc
cgccgcggtcgccgtggcggacgacgccgtggcaacgggaccggaacggacgccaatgcg
gccgatggcgagtcggacaaggcagcggacgagatgaccgccaacggcgacgaagacgcc
gaggctgtcgaggtctctgccgctccggaggctgaggttcagtccgagagccctgcggag
cttccgaatgaggctgaggcaacggtcgaggttcatgcagagaccgaggttgaagccgaa
agccagcccgatgccgaggaaggcaccgagcctcaggaaacggccgccgccgaggaaccg
gcaacggagaccgtgaccgaagaagcgcctgaggaaagccgcgaggcggaacttgagacg
gtcgatgcaggggctcctgcatccagcacctcctcgggcgctgcatcagctcccgagccc
gaggacgacgatcgtcccaagcgcagcggctggtggcagcgcagatccttcttctga
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