Hartmannibacter diazotrophicus: HDIA_2928
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Entry
HDIA_2928 CDS
T05217
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hdi
Hartmannibacter diazotrophicus
Pathway
hdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HDIA_2928 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hdi03019
]
HDIA_2928 (rnr)
03016 Transfer RNA biogenesis [BR:
hdi03016
]
HDIA_2928 (rnr)
Enzymes [BR:
hdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HDIA_2928 (rnr)
Messenger RNA biogenesis [BR:
hdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HDIA_2928 (rnr)
Transfer RNA biogenesis [BR:
hdi03016
]
Prokaryotic type
tRNA degradation factors
HDIA_2928 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
HTH_Crp_2
MarR_2
HVO_A0261_N
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
SON56469
UniProt:
A0A2C9D8G1
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All DBs
Position
1:3144886..3147186
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AA seq
766 aa
AA seq
DB search
MVKKIRPPKADSPPAPTREAVLRFIAEHPTKGTKRDIARAFDVTGDARVELKRLLKELEG
EGLIERKHRRIALPGALPDVMVCEVISRDAEGDIFAEPVKWDEEENGPPPKLLVIVPKVK
RGGDRVPGIGDRILARTSDLPRGYEHLARAALRVIKLLDRKPTGIVGVFKKTSGGGRIVP
VSRKQDEMIVDPEHAGDAVDGDLVSVEVHRIGRYGLPSAKVREVIGSMKSERAVSMIAIH
ANDIPYIFPQEVLAEAEQAKPATLSGKREDWRDLPLVTIDPPDAKDHDDAVHGMADPDPA
NVGGHIVTVAIADVGAYVRPGTALDKEALKRGNSVYFPDRVIPMLPERISNDLCSLREGE
DRPALAVRMIFDADGHKKSHTFHRIMMRSAAKLAYTQAQSAIDGHPDEKTAPLLDPILKP
LWEAYACLHRGRSAREPLELDLPERKIVLKPDGTVDRVVIPERLDAHKLIEECMIQANVA
AAETLERLKSPLVYRIHDQPTLAKLESLREFLSTMDLKLAKQGNLRPGQFNTILAKAAGS
ENVHLVNEVVLRSQSQAEYHPVNIGHFGLNLRRYAHFTSPIRRYADLIVHRALIRALKLG
DDGLPDGIEERLERIAADISACERRAMVAERETIDRLVAEWLSDQIGGTFRGRIAGVTKA
GLFVKLEGSGADGFVPASTLGADFYAYDEPSRALIGNRSGETFRMGDVVDVKLVEVAPLA
GALRFEMLSNGRKGKPIGNQRFAKRAERRAKTPPGRSPKTRGWARG
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
ttggtcaagaaaatccgtccgccgaaggccgacagcccgcccgcgccaacccgcgaggcg
gtgctgcgcttcattgccgaacatcccaccaagggcaccaagcgcgacatcgcccgggct
ttcgacgtcacgggcgacgcccgcgtcgagctcaagcgtctcctgaaggagcttgagggc
gaagggctgatcgagcgcaagcatcgccgcatcgcccttcccggcgccctgcccgacgtc
atggtctgcgaggtcatctcgcgcgatgccgagggcgacatcttcgccgagccggtgaag
tgggacgaggaagaaaacggcccgccgccgaagctgctcgtgatcgtgccgaaggtgaag
cgcggcggcgaccgcgtgcccggcatcggcgacaggattcttgcccgaacgtccgacttg
ccgcgcggctacgagcatctcgcccgcgccgccctgcgtgtcatcaagctgctggaccgc
aagcccaccggcatcgtcggcgtcttcaagaagacctccggcggcggccgcatcgttccc
gtctcgcgcaagcaggacgagatgatcgtcgatcccgagcatgccggtgacgccgtcgac
ggcgatctcgtttccgtcgaggtgcatcgcatcgggcgctacggcctgccgagcgccaag
gtgcgcgaggtcatcggctcgatgaagtcggagcgcgcggtctccatgatcgcgatccac
gccaacgacattccctatatctttccgcaggaagtcctggccgaggcagaacaggccaag
cctgcgaccctgtccggaaagcgcgaggactggcgcgacctgccgctcgtcaccatcgat
ccgccggacgccaaggaccatgacgacgccgtccacggtatggccgaccccgatcccgcc
aatgtcggcggccatatcgtgaccgtcgcgattgccgacgtcggcgcctatgtccgtccc
ggaacggccctcgacaaggaagcgctgaagcgcggcaactcggtctatttcccggaccgc
gtgatcccaatgctgccggagcggatttccaacgacctctgctcgctgcgcgagggcgag
gaccgccctgccctcgccgtgcggatgatcttcgacgccgacggccacaagaagagccac
accttccaccgcatcatgatgcgctcggcggcaaagctcgcgtatacgcaggcgcagtcc
gccatcgatgggcacccggacgagaagaccgcgccgttgctcgatccgatcctgaagccg
ctctgggaggcctacgcctgcctgcatcgcggacgcagcgcccgcgagcctctggaactc
gacctgcccgagcgcaagatcgtcctgaagccggacggcacggtcgaccgtgtcgtgatc
cccgaacgcctcgacgcccacaagctcatcgaagagtgcatgatccaggcgaatgtcgcg
gcggcggaaacgctggagcggctgaagagcccgctggtctatcgcatccacgaccagccg
acgctcgccaagctggaatcgctgcgcgagttcctgtcaaccatggacctgaagctcgcc
aagcagggcaacttgaggcccggccagttcaacaccatccttgccaaggcggcggggtcc
gagaacgtccacctagtcaacgaagtggtgctgcgctcgcaatcgcaggccgaatatcac
ccggtcaacatcgggcatttcggcctcaacctgcgccgctacgcccatttcacctcgccg
atccgccgctatgccgacctcatcgtccatcgggcgctgatccgcgccctgaagctcggc
gacgacggcctgccggacggcatcgaggaaaggctggagcggatcgcggcggacatttcc
gcctgcgagcgccgggcgatggtggccgagcgcgagaccatcgaccggcttgtcgccgaa
tggctgtcggaccagatcggcggcaccttccggggccgcattgccggcgtcaccaaggct
ggattgttcgtgaaactggaaggatcgggcgcggacggcttcgtgccggcgtcgacgctc
ggggcggacttctatgcctatgatgagccgagccgtgcccttatcggcaaccggtcgggc
gagaccttccgtatgggcgatgtcgtcgacgtgaagctcgtggaggtcgccccgctggcg
ggcgccctgcgcttcgagatgctctcgaacggccgcaagggcaagccgatcggcaaccag
cgcttcgccaagcgggccgagcggcgtgcaaagacaccgcccgggcgatcgcccaagacc
cgggggtgggccaggggatga
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