Hartmannibacter diazotrophicus: HDIA_4128
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Entry
HDIA_4128 CDS
T05217
Symbol
dapF
Name
(GenBank) Diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
hdi
Hartmannibacter diazotrophicus
Pathway
hdi00300
Lysine biosynthesis
hdi00470
D-Amino acid metabolism
hdi01100
Metabolic pathways
hdi01110
Biosynthesis of secondary metabolites
hdi01120
Microbial metabolism in diverse environments
hdi01230
Biosynthesis of amino acids
Module
hdi_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
hdi00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
HDIA_4128 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
HDIA_4128 (dapF)
Enzymes [BR:
hdi01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
HDIA_4128 (dapF)
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Ortholog
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Motif
Pfam:
DAP_epimerase
Pro_racemase
PhzC-PhzF
CntK_N
Motif
Other DBs
NCBI-ProteinID:
SON57669
UniProt:
A0A2C9DBW7
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All DBs
Position
1:complement(4485430..4486404)
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AA seq
324 aa
AA seq
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MKRLFRQHLRFAPKIRHECSNVQPFFRQRAQSNERQVVTGIPFAKMNGIGNEIVVLDLRD
SDLKVSPEAARAIAATPGAHFDQLMVLYPARTPGSDAAMTIFNIDGSESEACGNGTRCVA
MRLFEEGAKDRLVLETRAGLLPVRKTDDGQFTVGMGKPKFGWQDIPLAEPFHDTRYIELQ
IGPIDAPILHSPSVANIGNPHAIFWVDDVEAYDLARFGPLLENHPIFPERANISLAQVLS
PDHIRVKVWERGAGLTKACGSAACAVAVSAARTKRTGRKVLVSLPGGDLFIEWRDDDQIL
MTGPAELEHIGELPAETFEDTAAA
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggctcttccgtcaacacttgcgctttgccccaaaaatccgacatgaatgcagc
aacgtgcagccgttcttccggcagcgcgcacagagcaatgaaagacaggtcgtgaccggc
attcccttcgccaagatgaatggcatcggcaatgaaatcgtcgttctggatctccgcgat
tcggacctcaaggtgtcccctgaggccgcgcgcgcgatcgcggcaacgcccggcgcgcat
ttcgaccagctcatggtgctctatccggccaggacgcccggcagcgatgccgcgatgacg
atcttcaatatcgacggttcggaatcggaggcctgcggcaatggcacacgctgcgttgcc
atgcggctttttgaggaaggcgcgaaggatcggctggtgctggagacgcgcgcgggcctg
ctgccggtgcgcaagaccgacgatggccagttcaccgtcggcatgggcaagccgaagttc
ggctggcaggacattccgctcgccgaacctttccacgacacgcgctatatcgaattgcag
atcgggccgatcgatgcgccgatcctgcattcgccgtcggtcgccaatatcggcaatccg
cacgcgatcttctgggtcgacgacgtcgaggcctatgaccttgcccgcttcgggccgctt
ttggaaaaccatccgatcttcccggagcgggcaaatatctcgctggcgcaggtgctctcg
cccgaccatatccgcgtgaaggtgtgggagcgcggcgcagggctgacgaaggcctgcggc
tcggcggcctgcgcggtcgcggtgtcggcggcgcgcacgaagcggaccggccgcaaggtg
cttgtctccctgccgggcggcgatctcttcatcgagtggcgcgacgacgaccagatcctg
atgacgggaccggcggagctcgaacatatcggcgagctgccggcggagacgttcgaagat
actgctgcggcgtaa
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