KEGG   Hartmannibacter diazotrophicus: HDIA_4642
Entry
HDIA_4642         CDS       T05217                                 
Symbol
rho
Name
(GenBank) Transcription termination factor
  KO
K03628  transcription termination factor Rho
Organism
hdi  Hartmannibacter diazotrophicus
Pathway
hdi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hdi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HDIA_4642 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hdi03021]
    HDIA_4642 (rho)
   03019 Messenger RNA biogenesis [BR:hdi03019]
    HDIA_4642 (rho)
Transcription machinery [BR:hdi03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     HDIA_4642 (rho)
Messenger RNA biogenesis [BR:hdi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     HDIA_4642 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT S1CSD-TOTE-2 ATPase_2 AAA Fungal_virus_P2_C Spore_III_AA
Other DBs
NCBI-ProteinID: SON58183
UniProt: A0A2C9DD65
LinkDB
Position
1:complement(5062439..5063704)
AA seq 421 aa
MPEMKLQDLKSKTPTELLTVAEELEVENASTMRKQELMFAILKQLAAQDVDIIGEGVVEV
LQDGFGFLRSPDANYLPGPDDIYVSPSQIRRFSLRTGDTVEGQIRSPKEGERYFALLKVN
TVNFEDPDKARHKVHFDNLTPLYPDERFRMEVEGTTPKDLSARIIDLVAPLGKGQRALIV
APPRTGKTVLLQNIAHSITTNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAA
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKISDKRVFPA
IDIQRSGTRKEDLLVPPDKLKKTFVLRRILNPMGTTDAVEFLLDKLRQTRSNSDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgccggagatgaaactccaggatctgaaatccaagacgccgaccgaactgctgacggtc
gcggaggaactggaggtcgagaacgcctccaccatgcgcaaacaggaactgatgtttgcc
atcctgaagcagctggccgcccaggacgtcgacatcatcggcgaaggcgttgtcgaagtg
ctgcaggacggcttcggattcctgcgctctccggatgccaactatcttccgggtccggac
gacatctacgtgtcgccctcccagatccggcggttttcgctgcgcacgggtgacacggtc
gagggccagatccgcagcccgaaggaaggcgaacgctacttcgcgctcctcaaggtcaac
accgtcaatttcgaggatccggacaaggcccgccacaaggtccacttcgacaacctgacg
ccgctctatccggacgagcgcttccggatggaggtcgagggaacgacgccgaaggacctg
tcggcgcggatcatcgatctggtcgcaccgctcggcaagggccagcgcgcgctgatcgtc
gcgccgccgcggaccggcaagacggtgctgcttcagaacatcgcccattcgatcacgacc
aaccatccggaatgctatctgatcgttctcctgatcgacgagcgtccggaagaagtcacc
gacatgcagcgttcggtgaagggcgaggttgtctcctcgacctttgacgagccggccgcc
cgccacgtccaggtcgccgaaatggtgatcgagaaggccaagcgcctcgtcgagcatgga
cgcgatgtcgtcatcctgctcgattcgatcacccgtctcggccgcgcctacaacaccgtc
gtgccgtcctccggcaaggtgctgaccggcggtgtcgacgccaatgccctgcagcgcccg
aagcgtttcttcggcgcggcccgtaacatcgaggaaggcggatcgctgacgatcatcgcg
accgcgctgatcgacaccggcagccgcatggacgaagtgatcttcgaagagttcaagggc
accggcaactcggaaatcatcctcgaccggaagatctccgacaagcgcgtcttcccggcg
atcgatatccagcgctccggtacccgcaaggaggaccttctggtgcctccggacaagctc
aagaagaccttcgttctgcggcgtatcctcaatcccatggggacgaccgacgcggtggaa
tttttgctcgacaagctgcggcagacgagaagcaacagcgacttcttcgattccatgaat
acctga

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