Halobacterium sp. DL1: HALDL1_08060
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Entry
HALDL1_08060 CDS
T03878
Name
(GenBank) transcription initiation factor IIB 2
KO
K03124
transcription initiation factor TFIIB
Organism
hdl
Halobacterium sp. DL1
Pathway
hdl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hdl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HALDL1_08060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hdl03021
]
HALDL1_08060
Transcription machinery [BR:
hdl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HALDL1_08060
Prokaryotic type
Archaeal type
TFB
HALDL1_08060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_C
Cyclin_N
Trm112p
HTH_Tnp_ISL3
Zn_ribbon_tTFIIB
Sigma70_r4
Ribosomal_L37ae
Anti-TRAP
DZR_2
Cas12f1-like_TNB
DUF7129
Motif
Other DBs
NCBI-ProteinID:
AHG03554
LinkDB
All DBs
Position
complement(1253984..1254961)
Genome browser
AA seq
325 aa
AA seq
DB search
MSDTKIRTYSSDQRQTEEESTVENENHESFTCPECSGRVVNDEEHGESVCTECGLVVEED
SIDRGPEWRAFNSNEKDSKSRVGAPTTNMMHDKGLSTNIGWQNKDAYGNSLSSNQRQKMQ
RLRKWNERFRTRNSKERNLKQALGEIERMSSALGLPKEVRETASVIYRRALSEDLLPGRS
IEGVATSALYAAARQMQTPRSIDEVANVSRIDAMEFKRTYRYIVRELGLEVAPADPASYV
PRFASELDLPDEVERRARELLDNAQKDGVTSGKSPVGLAAAAIYAASLLTNHKVTQSQVS
DVTDVSEVTIRNRYQELLEATEVAA
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaccaaaatccgaacgtactccagtgaccagcgacagaccgaagaggagtcc
acagtagagaacgagaaccacgagtcgttcacctgccccgagtgtagcgggcgggtcgtc
aacgacgaggagcacggcgagtccgtctgcaccgagtgtggactggtcgtcgaggaggac
agcatcgaccgggggccggagtggcgcgcgttcaactccaacgagaaggacagcaagagc
cgcgtcggcgccccgacgacgaacatgatgcacgacaaggggctctcgacgaacatcggc
tggcagaacaaggacgcctacggcaactcgctgtcctccaatcagcgccagaagatgcag
cgcctccgcaagtggaacgagcgcttccgcacccgcaacagcaaggagcgcaacctcaag
caggccctcggcgagatcgaacggatgtcctcggcgctcggcctcccgaaggaggtccgc
gagacggcgtcggtcatctaccgacgcgcactgagcgaggacctgctgcccgggcgctcc
atcgaaggcgtcgccaccagcgcgctctacgccgccgcgcgacagatgcagacgccgcgg
tccatcgacgaggtggccaacgtgagccgcatcgacgcgatggagttcaagcggacgtac
cgctacatcgtccgcgaactcggccttgaggtcgcgcccgcggaccccgcgagctacgtg
ccgcggttcgcctccgaactcgacctccccgacgaggtcgagcgccgcgcccgtgaactg
ctcgacaacgcccagaaggacggcgtcaccagcgggaagagccccgtcggtctcgccgcc
gcggccatctacgccgccagcctgctcaccaaccacaaggtgacccagagtcaggtcagc
gacgtcacggacgtgagcgaggtcaccatccggaaccgctaccaggagctcctggaagcg
accgaagtcgccgcgtag
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