Hyphomicrobium denitrificans ATCC 51888: Hden_0397
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Entry
Hden_0397 CDS
T01265
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn02020
Two-component system
hdn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Hden_0397
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Hden_0397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hdn03021
]
Hden_0397
Transcription machinery [BR:
hdn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Hden_0397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
ADJ22219
UniProt:
D8JRJ0
LinkDB
All DBs
Position
complement(404604..406136)
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AA seq
510 aa
AA seq
DB search
MALSAKLELRQGQQLVMTPQLQQAIRLLQLSNMELTEFVDAELEKNPLLEREETSAAAKT
SDDPVSQAEERTSSIDEERWLDLRQPVQDHSGGLDTDFGNVFQGPGTGEPLGGPSSGLGW
ANVTQRMHSGGDGDSDLEDYVANQVSLRDHLNAQLPLTIVDPVERIIGQYLVDLVDEAGY
IPANLEPLSDRLGAPLELVESVLDKLQTFDPPGIFARSLAECLALQLKDQNRYDPLMAEL
LANLDLLGNRNLAALKKAVGVDMDELADMIREIKRLNPKPGLKFGSVQMQPVVPDVIVRA
ASDGGWHVELNSDTLPRVLVNRTYYTRIAKTATNERDKGYLFDCLQTANWLVKSLDQRAR
TILKVAEQIVRQQDSFFMYGVQHLRPLNLRTIADAISMHESTVSRVTSNKYIATPRGIFE
LKYFFTSAIASAADGEAHSSESVRHRIKQLIDAEHADAVLSDDQLVDRLKGEGIDIARRT
VAKYREAMRIPSSVQRRRDKRLVERLGGAG
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggcgctttctgcaaaacttgagctgagacagggccagcagctggtgatgacaccacag
ctgcagcaggccatccggctcttgcagctctcgaacatggaactgaccgaattcgtcgac
gccgaactggaaaaaaatcccttactggagcgcgaggaaacgagcgctgcagcgaaaacc
tcggatgatcccgtatcgcaagccgaggaaagaacatcctcgatcgatgaagaacgctgg
ctggatctgaggcagcccgtgcaggatcattccggcggcctcgacaccgatttcggcaac
gtcttccagggaccgggaacaggcgaaccgctcggcggcccttcatcgggcctcggctgg
gcaaacgttacgcagcgcatgcattccggtggcgatggcgatagcgatctcgaggattac
gtcgccaatcaggtatcgcttcgcgatcatctcaacgcccaattgccactgacgatcgtc
gatccggtcgagcgcatcatcggccaatacctcgtcgatctcgtcgacgaagcaggctac
atcccagccaacctcgagcctctgtcggaccgtctcggcgccccgctcgagctcgtcgaa
agcgttctcgacaagttgcagacattcgatccgcctggaattttcgcgcggtcgctcgcc
gaatgcctcgcattgcagctgaaagatcagaaccgctacgatccgttgatggccgagttg
ctggccaacctcgacctcctcggcaatcgcaatctcgcggcgctaaagaaagccgtcggc
gtcgatatggacgagcttgccgacatgatccgcgagatcaagcggctcaatccgaaaccc
ggcttgaagttcggctccgtgcaaatgcagccggtcgtgcccgacgtgatcgtacgcgcc
gcgtccgatggcggctggcacgtcgagctgaacagcgacacgctgccccgcgttctcgtc
aaccgcacatattacacgcgcatcgccaagaccgcgacgaacgagcgtgacaagggctat
ctcttcgactgcctgcaaaccgcgaactggctcgtgaaaagcctcgatcagcgcgcgcgc
acgattctgaaggtcgccgagcaaatcgtgcgccagcaggacagcttcttcatgtacggc
gtgcagcatctcaggccgttgaacctcagaaccatcgccgacgcgatctcgatgcacgag
tcgaccgtctcgcgcgtcacctcgaacaaatatatcgcgacaccgcgtggcatctttgaa
ctgaaatacttcttcacctcggccatcgcatcggccgccgacggcgaagctcattcgtcc
gagtccgttcgtcaccgcatcaagcagctgatcgacgccgagcacgccgacgcggttctc
tccgatgatcagcttgtcgaccggttgaaaggcgagggcatcgacatcgctcgccgcact
gtcgccaaatatcgcgaggccatgcgcattccgtcatcagttcagcgccgccgcgacaag
cggctggtcgaaagactaggcggggccggttga
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