Hyphomicrobium denitrificans ATCC 51888: Hden_0400
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Entry
Hden_0400 CDS
T01265
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hdn03016
]
Hden_0400
Enzymes [BR:
hdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Hden_0400
Transfer RNA biogenesis [BR:
hdn03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Hden_0400
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
FLIC_barrel
Motif
Other DBs
NCBI-ProteinID:
ADJ22222
UniProt:
D8JRJ3
LinkDB
All DBs
Position
complement(409170..409787)
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AA seq
205 aa
AA seq
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MTATKIKLHKGDLPTGLTFPNGIAIDTETMGLNPHRDRLCLVQLSGGDGTAHLVKFDGKS
YDAPNLKALLADPKSLKIFHFARFDVAVLEHYLGVVTSPIYCTKIASKLARTYTDRHGLK
DLVGEILGIEISKQQQSSDWGAAELSDSQRSYAANDVLHLHALKTRLDEMLARTGRQDLA
KAAFGFLPIRAKLDLLGFEDDIFAH
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaacgaaaatcaaactccataaaggcgatctccctaccgggctgacgttcccg
aacggcatcgccatcgacaccgaaaccatgggtttgaatccgcaccgcgaccgcctctgc
cttgtgcagctctcgggcggcgacggcacggcccatctcgtcaagttcgacggcaaaagc
tatgacgcgccgaacctgaaagcgctgctggccgatccgaagtcgctgaaaatctttcac
ttcgcccgtttcgacgtcgccgtgctcgagcattatcttggcgtcgtgacgagccccatt
tactgcaccaagatcgcatccaaactcgcgcgcacctataccgaccgccacggcctcaag
gatctcgtaggcgaaattctggggatcgagatttccaagcagcagcagagcagcgattgg
ggcgccgccgaactgtccgacagccagcggagctacgccgccaacgacgtgctgcatctc
cacgctctcaagacccgtctcgacgaaatgctggcgcgaaccggccgccaggatctggcc
aaggcggcattcggatttctcccgattcgtgcaaaactcgaccttctgggcttcgaggac
gacattttcgcccactga
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