Hyphomicrobium denitrificans ATCC 51888: Hden_0631
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Entry
Hden_0631 CDS
T01265
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hdn03032
]
Hden_0631
03400 DNA repair and recombination proteins [BR:
hdn03400
]
Hden_0631
Enzymes [BR:
hdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Hden_0631
DNA replication proteins [BR:
hdn03032
]
Prokaryotic type
DNA Topoisomerases
Hden_0631
DNA repair and recombination proteins [BR:
hdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Hden_0631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ADJ22452
UniProt:
D8JSW7
LinkDB
All DBs
Position
complement(662072..664834)
Genome browser
AA seq
920 aa
AA seq
DB search
MNVVIVESAAKAKTINKYLGSGYKVIASYGHVRDLPAKDGSVEPDHDFAMQWEVDSKSQK
IMREIADALKNADKLILATDPDREGEAISWHILEILNNKKALKKGTEVERVAFNAITKQS
ILAALKEPRKIDEPLVEAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCD
REAEIEAFKTDEYWTIEALLTTSRGDDVKTRLVAIEGTALKKLDIKDEASATAIKAALEG
RDFRVASIEKKAAKRNPYPPFTTSTLQMDASRKLGFSAKQTMQIAQRLYEGVDIGGETVG
LITYMRTDGVQIVPEAVSQIRDVISAEYGKQYTPFAREYKTKAKNAQEAHEAIRPTDPRR
KPDQVRKYLEKDQAALYDLIWKRAIASQMAPADMEQTAVEIEAKGSDGKNYGLRANGSVL
LFDGFLKVYEEGRDDRFRYIEKGKDDPEGEDEDRRLPALAEGDHLKDKEISADQHFTQPP
PRFSEATLVKRMEELGIGRPSTYASTMAVLVDRDYVRIEKKRLVPEDKGRLVIAFLESFF
KRYVEYDFTAELEEKLDLISNNELAYKEVLRDFWRQFIASVGEIKDLRVGDVLEALNEML
GPHVFPDKGDGSDPRLCPKCNQGRLSLKISGKYGAFIGCGNYPECNYTRQLSQSANNGEA
ALDGKVLGYNDDGIAVALRTGRFGPYIQLGEATGDEKPKRSSIPKGIDAATLDFEKAMQL
LSLPRDVGVHPTEGGMITASLGRFGPFILHEHDGAKTYVNLGNVEDVFTIGINHAVTLLA
EKRAGGGKSRFQRNAPKVLKDLGAHPSEGGPVQVLEGRYGPYVTHNKVNATVPRGKDPSA
LTMDEAVALIAERIANGGGKKSKASRSSAKPKAAKAAKPAKGEAAPAAKRTAKPAAAKKA
APAKKSAAKPAAKKLAKAKA
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcgttatcgtcgaatccgccgctaaggccaagacgatcaacaagtatttgggg
tctggctacaaagtcattgcgtcctacgggcacgtccgtgaccttcctgcgaaggatggc
tcggtggagccggaccacgatttcgcgatgcaatgggaagtcgatagcaagtcccagaag
atcatgcgcgagatcgccgacgcgctcaagaacgccgacaagctgatcctcgcgaccgac
cctgatcgcgaaggcgaggcgatctcctggcacatcctggagatcctcaataataagaag
gcgctgaaaaagggcaccgaggtcgaacgcgtcgccttcaacgccatcaccaagcagtcg
atcctcgccgcgctgaaagagccgcgcaagatcgacgaaccgctcgtcgaagcctacctt
gcccgtcgcgcgctcgattatctcgtcggcttcacgctgtcgccggttctctggcgcaaa
ctgccgggcgcacgctcggccggccgcgtgcagtcggtggcgctccgtctcgtctgcgat
cgcgaagccgagatcgaagccttcaagaccgacgaatactggacgatcgaagcgctgctg
acgacgagcagaggcgacgacgtcaagacgcgcctcgtcgccattgaaggcaccgcgctc
aaaaagctcgacatcaaggacgaagcatccgcgaccgcgatcaaagccgcccttgaaggc
cgcgatttccgcgtcgcgtcgatcgagaagaaggcggcaaagcgcaacccctatccgccg
ttcacgacctcgaccctacagatggacgcgtcgcgcaagctcggcttctcggccaagcag
acgatgcagatcgcgcagcgtctttatgaaggcgtcgacatcggcggcgagacggtcggc
ctcattacttatatgcgaaccgacggcgttcagatcgtccctgaagccgtgagccagatc
cgcgacgtcatctcggccgaatacggcaagcagtacacgccgttcgcgcgcgaatacaaa
acgaaggcgaaaaatgcgcaggaagcgcacgaagccatccgtccgaccgacccgcgccgc
aaacccgatcaggttcgcaagtacctcgaaaaggatcaggcggcgctttacgatctgatc
tggaagcgcgcgatcgcgagccagatggcccccgccgacatggaacagaccgccgtcgag
atcgaggccaaaggcagcgacggcaaaaactacggcctgcgcgccaacggctcggtgctg
ctgttcgacggcttcctcaaagtctacgaggaaggccgcgacgaccgcttccgctacatc
gagaagggcaaggacgacccggaaggcgaagacgaggaccgccgcctgccggcgctcgcc
gagggcgatcatctcaaagacaaggaaatcagcgcggaccagcacttcacgcagccgccg
ccgcgcttttccgaggcgacgctcgtcaagcgcatggaagaactcggcatcggccggcct
tccacctacgcctcgacgatggccgtgctcgtcgatcgcgactatgtccgcatcgagaag
aaacgcctcgttcccgaggacaagggccgcctcgtcatcgcgttcctcgagagcttcttc
aagcgctacgtcgaatacgatttcacggcggagctggaagaaaagctcgacctcatctcc
aacaacgagctggcctataaagaagtgctgcgcgatttctggcggcagttcattgcctcg
gttggcgagatcaaggatctgcgcgtcggcgacgttctcgaagccctgaacgaaatgctc
gggccgcacgtcttccccgacaagggcgacggcagcgatccgcgcctatgcccgaagtgc
aatcagggtcggctcagcctcaagatttcaggcaaatacggcgccttcatcggttgcggc
aactatccggaatgcaactacacgcgccagctttcccaaagcgccaacaatggcgaggcg
gcgctcgacggcaaagtgctcggatataatgacgacggcatcgccgtcgcgctgcgcacc
ggccgcttcggtccttacatccagctcggcgaagccacaggcgacgagaagccgaaacgc
tcgagcattccgaagggcatcgacgccgcgacgctcgacttcgaaaaggcgatgcagctt
ctctcgctgccgcgcgacgtcggcgtgcatccgaccgaaggcggcatgatcaccgcgagc
cttggccgcttcgggccgttcatcctgcacgagcacgacggcgccaaaacctacgtcaat
ctcggcaacgtcgaagacgtgttcacgatcggcatcaatcacgccgtgacgctgcttgcc
gaaaagcgcgcgggcggcggcaagagccgcttccagcggaatgctcccaaggttctgaaa
gacctcggcgcgcatccgagcgaaggcggccccgtgcaggtgctcgaaggccgctacggt
ccttacgtcacgcacaataaggtcaacgccaccgtgccgcgcggcaaggacccttcggcg
ctgacgatggatgaagccgtggcactcatcgccgagcgcatcgccaacggcggcggcaag
aaatcgaaagcatcgcgttcgtccgccaagccgaaagccgcgaaggctgcaaagcccgcc
aagggcgaagcagcacccgccgcaaaacggactgcaaaaccggcagcggcgaagaaagcg
gctccggctaagaagtcagcagccaaacccgccgctaaaaaactcgcaaaggccaaagcc
tga
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