Hyphomicrobium denitrificans ATCC 51888: Hden_1654
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Entry
Hden_1654 CDS
T01265
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hden_1654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdn03400
]
Hden_1654
Enzymes [BR:
hdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hden_1654
DNA repair and recombination proteins [BR:
hdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Hden_1654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADJ23461
UniProt:
D8JYK9
LinkDB
All DBs
Position
1686594..1690079
Genome browser
AA seq
1161 aa
AA seq
DB search
MTDQVQTSRVIFSGVPEGFDGRVLADITRAARGGDQPGLHLHVVRDDRRLEELQAAVAFF
APDIAVVPFPAWDTVPYDRTSPNAEIVARRITTLGRLAIGGRKKPTLVLTTVNAILQRVP
PRSFIRGAVKTIAPGQRIDPAELIRRLESYGYDRSSTVMEPGEYAQRGGILDLYPPGRSN
PIRLDFFGDTLESVKAFDAETQRSMKPVPKFSLMPVSEVAFGEAATALFRTRYVALFGGN
TGDDPLYEAVSSGRRYQGQEHWLPFFHPALETLFDYLPGVGISFDHMADEAVKRRFEQVR
EHYEARVDSLEGQRFGAPPYKPVPPDQMFIDGKDWASALDARTVSRLTPFDDPGTSNVYQ
MKGRRGRTFAAERADPDNNVFDAVVGHIRRIHADSRRVILAAWTTGARERLITLLADHGL
KDAEKVESFTEVQALKPNATAFAVFGIEEGFETPDFAVIAEQDVLGDRLVRQRRRARKAA
DVLTEATALSVGDLVVHSDHGIGRFAGLQTITALGAPHDCLELHYAGGDKLFLPVENIEL
LSRYGADEGDAQLDRLGGVGWQSRKAKLKKRLREIANELIKIAALRALREAPALVPPTGA
YDEFVARFPYEETEDQATSIESVLADLASGRPMDRLVCGDVGFGKTEVALRAAFVGAMNG
LQVAVVVPTTLLARQHFRTFTQRFQGLPVKIAQASRMVGAKGLAEVKAGLKSGDIDIVVG
THALLGKTIEFQRLGLLIIDEEQHFGVNHKERLKKMREDVHVLTLSATPIPRTLQLALTG
VRELSLITTPPVDRMAVRTFISPFDPVILKEALRRERFRGGQTYYVAPRISDLDDIAEFL
REAVPDLVFARATGQMSPTELEDVMTAFYEGKYDILLSTAIVESGLDVPNANTLIVHRAD
MFGLAQLYQLRGRVGRSKTRAYAYITTPPDKKLTEGAEKRLKVLQSLDTLGAGFSLASHD
LDIRGAGNLLGEEQSGHIREVGFELYQSMLEEAVAAMKGGEIEADDKWSPEIQLGTSIMI
PEAYVTDLQLRLGLYRRLSSLEKRSDIDAFAAELVDRFGSLPDEVTHLLDVMEIKGLCRA
AGIAKVDAGPKGGVITLHKGRFANPEGLIAFVQNSRGALKVQPDQRLVYRADWDLPEARL
KGVRALIQKFAELASKTKQAA
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgacggatcaagtgcagacctcgcgggtgattttttccggcgtcccggaagggttcgac
ggccgcgttcttgcggacatcacacgcgccgcccgtggtggcgatcagccgggtctgcac
ctgcacgtcgtgcgcgatgacaggcgtctcgaagaattgcaggcggccgtcgcgttcttc
gcgcccgacattgccgtcgtgccgtttccggcgtgggatacggttccctatgaccgcacg
agccccaacgccgagatcgtggcgcgccgtatcacgacgctcggacgtctcgcgattggc
ggacgcaagaagccaacgctggttctgacgaccgtcaacgccattctgcagcgcgtgccg
ccgaggagtttcatccggggtgcggtcaagaccatcgcgccaggccagcgcatcgatccg
gcggagctgatccggcggctcgaatcttacggctacgaccgctcgagcacggtgatggag
ccgggcgaatacgctcagcgcggcggcattctcgatctctatccgccggggcgcagcaat
ccgatccgcctcgacttcttcggcgacacgctcgaaagcgtcaaagcattcgacgccgaa
acgcagcgctcgatgaagccggtgccgaagttttcgctgatgccggtcagcgaagtcgca
ttcggggaagcggcgacggcgctgttccggacgcgctacgtcgcgctgtttggcggcaat
accggtgacgatccgctatacgaggccgtcagcagcgggcggcgctatcagggccaggaa
cactggctgccgtttttccatcccgcgctcgaaacgctgttcgactatctgcctggcgtc
ggcatcagtttcgatcacatggcggacgaagccgtgaagcgccgcttcgagcaagtgcgc
gagcactacgaagcacgtgtggactcgctcgaagggcaacgcttcggcgcaccgccgtat
aagcctgtgccgccggatcagatgttcatcgacggcaaggactgggcgtcggcgctcgat
gcgcgcacggtttcgcggctgacgccgttcgacgatcccggcacgtcgaacgtctaccag
atgaaaggccgccgcggccggacgttcgcggccgagcgcgccgatcccgacaacaacgtg
ttcgacgccgtcgtcggtcacatccggcgcattcacgcggactcgcggcgcgtcattctc
gcggcttggacgacgggcgcacgcgagcggttgatcacgctgctcgccgatcacggcctg
aaagacgcggaaaaggtcgaaagcttcaccgaggttcaggcgctgaagcccaacgcgacg
gcgttcgcggtgttcggcatcgaggaaggcttcgagacgccggacttcgccgtcatcgcc
gaacaggatgtgctgggcgatcgcctcgtgcgccagaggcggcgcgcgcgcaaggcggcc
gatgttctgacggaggcgacggcgctgtcggtcggcgacctcgtcgtgcacagcgatcac
ggtatcggccgtttcgcaggattgcagacgatcaccgcgctcggcgcaccgcacgattgt
ctcgaacttcactacgcgggcggcgataagctgtttctgcctgtcgagaacatcgagctt
ctgtcgcgctacggcgcggacgagggcgatgcgcagctcgatcgcctcggcggcgtcggc
tggcaatcgcgcaaggccaagctcaagaagcggctgcgcgagattgccaacgaactcatc
aagatcgcggcgctcagagccttgcgcgaagctcccgcgctcgtgccgccgacaggcgct
tacgacgaattcgttgcgcgtttcccttacgaggaaacggaagatcaggcgacgagcatc
gagtccgttcttgccgatctcgcatccggcagaccgatggaccggctcgtctgcggcgac
gtcggcttcggcaaaacggaagttgcgctgcgcgccgcgttcgtcggcgcaatgaacggc
ttgcaggttgccgtcgtcgtgccgacgacgcttctggcgcgtcagcatttcagaacgttc
acgcaacgcttccagggattgccggtcaagatcgcgcaggcgtcgcgcatggtcggcgca
aaagggctcgcggaagtgaaagccgggctcaagtccggcgacatcgacatcgtcgtcggt
acgcatgctctgctcggaaaaacaatcgagttccagcggctcggcctgctgatcatcgac
gaagagcagcacttcggcgtcaatcacaaagagcgtctcaagaagatgcgcgaggacgtg
cacgtgctgacgctgtcggcaacgccgatcccgcgtacgctgcaattggcactgacaggt
gtgcgcgaactgtcgctgatcacgacgccgcctgtcgaccgcatggcggtgcgcacgttc
atttcgccgttcgatccagttattttgaaagaagcgctcaggcgcgagcgcttccgcggc
ggacaaacctattacgtcgcgccgcgcatttccgatctcgacgacattgcggagtttttg
cgcgaggcggtgcccgatctcgtgttcgcgcgtgcgacgggacaaatgtcgccgaccgaa
ctcgaagacgtgatgaccgcgttctacgaaggcaaatacgacattctgctgtcgacggcg
atcgtcgagtccggtctcgacgtaccgaacgccaacacgctgatcgtgcatcgcgccgac
atgttcggcctggcgcagctttatcaattgcgcggccgcgtcgggcgatcgaagacgcgc
gcctatgcctacattacgactccgccggacaagaagctgaccgaaggcgcggagaaacgg
ctcaaggttctgcagtcgctcgataccctcggcgcgggcttctcgctggcgtcgcacgat
ctcgatattcgcggcgcgggcaatctgctcggcgaagaacagtcgggtcacatccgcgaa
gtcggcttcgagctttaccagtcgatgctggaagaagcggtcgccgcgatgaagggcggc
gaaatcgaagccgatgacaagtggagcccggagatccagctcggcacgtcgatcatgatc
ccggaggcttacgtcaccgatctacaacttcgtcttggtctctaccggcgtttgtcgagt
ctcgaaaagcgctccgacatcgatgcgttcgccgccgagcttgtcgatcgcttcggatcg
ctgccggacgaagtcacacatctgctcgacgtcatggagatcaagggcctttgccgcgct
gccggcatcgcgaaagtcgacgcgggtccgaagggcggcgtgatcacgctgcacaaggga
cgcttcgcaaatccggaaggcctgatcgcgttcgtgcaaaattcgcgcggggcgcttaaa
gtgcagcccgaccagcggctcgtctatcgcgccgattgggatttgccggaagcgcggctc
aaaggcgttcgcgcgcttatccagaaattcgcagagcttgcgagcaagaccaagcaggcg
gcttaa
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