Hyphomicrobium denitrificans ATCC 51888: Hden_1836
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Entry
Hden_1836 CDS
T01265
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn00061
Fatty acid biosynthesis
hdn00071
Fatty acid degradation
hdn01100
Metabolic pathways
hdn01212
Fatty acid metabolism
hdn02024
Quorum sensing
hdn04146
Peroxisome
Module
hdn_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Hden_1836
00071 Fatty acid degradation
Hden_1836
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Hden_1836
09145 Cellular community - prokaryotes
02024 Quorum sensing
Hden_1836
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
hdn01004
]
Hden_1836
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hdn04147
]
Hden_1836
Enzymes [BR:
hdn01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Hden_1836
Lipid biosynthesis proteins [BR:
hdn01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Hden_1836
Exosome [BR:
hdn04147
]
Exosomal proteins
Exosomal proteins of breast milk
Hden_1836
Exosomal proteins of breast cancer cells
Hden_1836
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ADJ23639
UniProt:
D8JZ37
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All DBs
Position
1863366..1865078
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AA seq
570 aa
AA seq
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MTPEAAQPSGSLNPPWIASYPPEIDWFMPIPTGPVPELLERAVRRFPHNPAISFLGRTTS
YAELAAEVDRVTAGLQKSGIGRGTKVGLFLPNTPTFIVYYYAILKAGGTVVNFNPLYTLE
ELTFQAQDSETEVMVTHDLAALFPKLEELMLRGVVARTIVVPFRSVLSPLKGLLFSIFKR
SDIANVAGSRAADKVIDGAKLSATSEPPTPVAINADEDVAVLQYTGGTTGTPKGAMLTHA
NLTANTAQIMAWGVNLKPGEESILGALPLFHVFAMTVVMNMAVELAAKIILIPRFKLIEA
LKLIDREKPTVLPAVPTILTAMLHYPKFKSYDVSSLRFCLSGGAPLPIEVKLQFEDVSGS
KVVEGYGLSEASPVLTCNPVHMEPVAGSIGPPLPGTIISLRDLDDPTKEVPQGERGELCA
KGPQVMKGYWKKPEETAKQFVGDFLRTGDVAIMDQNGYFSIVDRIKDLIICSGYNVYPRR
IEDAIYQHPAVEEVTVIGIPDDYRGEAPKAFIKLKAGMTATAADILKHLETKISKIELPA
QIEFRDALPKTMIGKLSKKELVAEERKKRD
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccgaagcagcccagccgtctgggtctctcaatccgccctggattgcctcgtat
ccgccggaaatcgactggttcatgccaattccgacaggtccggtgccggaactgctggaa
cgcgccgtccgccgcttccctcataacccggccatcagcttcctgggccgcacgacatcc
tacgcagaactcgctgccgaggtcgaccgcgtcacagccggattgcagaaatccgggatc
ggccgtggcaccaaagtcggtctatttcttccgaacaccccgaccttcatcgtttattat
tacgcaatactcaaggccggcggcacggttgttaatttcaacccgctttatactctggaa
gagcttacatttcaggcgcaggacagcgaaaccgaggtgatggtgacgcatgacctcgct
gcgcttttcccgaagctcgaagagctcatgctgcggggtgtcgtcgcacgcaccatcgtc
gtgccgttccggagcgttttgtcgccgctcaaggggctgctgttctcgatcttcaagcgc
agcgacatcgccaacgtcgccgggtcgcgggcggcggacaaggtgatcgacggggcgaag
ctttccgccaccagcgaaccgccgacgccggtcgccatcaatgccgacgaggacgtcgcg
gtgctgcagtacaccggcggcacgaccggcacgcccaagggcgcgatgctgacgcacgcc
aacctcaccgccaacacggctcagatcatggcctggggcgtcaacctcaagccgggcgag
gaaagcattctgggcgcgctgccgctgttccacgtcttcgcgatgacggtcgtgatgaac
atggcggtcgagcttgccgcaaagatcatcctcatcccacgcttcaagctcatcgaggcg
ctgaagctgatcgaccgcgagaagccgaccgtgctccccgccgtgccgaccattctgacg
gcgatgctgcactacccgaagttcaagtcctacgacgtctcgtcgttgcgtttctgcctg
tcaggcggcgcgccgctcccgatcgaggtgaagctgcagttcgaggacgtttcgggttcg
aaagttgtcgagggctatgggctttcggaggcgtcgcccgtgctgacgtgcaacccggtg
catatggagccggtcgcgggctcgatcgggccgccgcttccgggcacgatcatctcgcta
cgcgatctcgacgatccgacgaaagaggttccgcagggcgagcgtggcgaactctgcgcc
aagggtccgcaggtgatgaagggctactggaaaaagcccgaggaaacggcgaagcagttc
gtcggcgatttcctccgcaccggcgacgtcgcgatcatggatcagaacggctatttctcg
atcgtcgaccggatcaaggatctgatcatctgctcgggctacaacgtctacccgcgccgt
atcgaggatgcgatctaccagcatccggcggtcgaggaagtgaccgtgatcggcattccc
gacgattaccgcggcgaagcgccgaaggccttcatcaaactgaaggccggcatgacggcg
acggccgccgacattctgaagcatctcgaaaccaagatttcgaagatcgagctgccggct
cagatcgagttccgcgacgccctgccgaagacgatgatcggcaagctgtcgaagaaggag
cttgtcgcggaagaacggaagaagagggattag
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