Hyphomicrobium denitrificans ATCC 51888: Hden_2309
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Entry
Hden_2309 CDS
T01265
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdn03400
]
Hden_2309
Enzymes [BR:
hdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hden_2309
DNA repair and recombination proteins [BR:
hdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Hden_2309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
ADJ24106
UniProt:
D8JRC1
LinkDB
All DBs
Position
2361086..2364202
Genome browser
AA seq
1038 aa
AA seq
DB search
MAANIFTLPPGVPFLKAVARAILNGDLPAPGGAAPDLLKLPNITLLLPTRRAARTARDAF
LSVANTPAIIMPRIRPISEGDDDRSLISSLAGDGLSSASALDQPPAIDPLDRTLVLMQLI
SHWRATMAQSDADRSSGSTPAQSARLAAELGKLMDDIERENVSLSDIQNLVPETYAEHWQ
KTVDFLKIVTEFWPAHLEASGMTSPEARRNALILAEAERIAKLAPDEIVIVAGITGSIPA
TVELMRAVAARPSGAIVLPALDQSLDDASWSAIVSGHPEHPQFGLKKLLDGLNVERGAVL
TLPGFEAGDVDRTRSAFVSESMRPSSSTDQWHRYATTADKGELEKALAGISLIEAPSAQD
EAETVALILREAIETPGQTAALVSPDRLLARRVAIRLEAWGIRVDDSAGRPFAKTVPGAF
LALVIGAMVSEFAPAETMALLRHPLCRLKFNAFDIRKYARALEISAFRTSYLGHGLDGIR
AALETAERDRAEKKRMHPAARRLWSEDCDGARELVARLAAAFQPLADLYAANGDQTLAEF
ARAHAEAAEALAQLPDDDAAAEASANPLWQGESGDTASRFFAKLLDDATPAVAISAADYA
DLYATLLARENVRERTAVHPRISIWGPFEARLQQPDVLVLGSLNEGTWPEAAEPGAWLNR
PMRRDLGLPSPEEEIGRAAHDFTSLLGAKTIYLTRAEKVDGVPTVPSRWLMRMRALLKGM
KLESVLVADKPWLAWARARDRIVGKRIAIKPPEPRPALALRPRRMSVTDIERWIANPYAT
YARHILKLEPLPPLGASPDASLRGALVHDVLSRFANAFPDRLPDDPLAELEKIAADVLQT
YTGNARIAAFWMPRLKRFLSWFAEGEEKRREGVRSVIAEISGALVLAPTPDPFTLTARAD
RIDDTGSAVIITDYKTGAIPKQEWVENGRSPQLPLEAAIALGETGFPNLAGRTVEALRYI
RASGGEPAGEERAIKSNDIGTLAAQARQGLERLIAEFDDPATPYRALRRPSYSYDYDAYA
QLARVAEWSAHVDEEAAQ
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgaacattttcacgctgcctcccggcgtgccgttcctcaaggccgtcgcacgc
gcgatcctgaacggcgaccttcctgctccgggcggcgccgcacccgatctgctcaagctg
ccgaacatcacgctgcttctgccgacgcggcgcgccgcccgcactgcacgcgacgcgttt
ctgtccgtcgcgaacacgcctgcgatcatcatgccgcgcatccggccgatctcggaaggc
gatgacgatcgttcgctgatctcgtctctcgcaggcgatggtctgtcgagtgcttcggcg
ctcgatcaacctcccgcaatcgatccgctcgaccgaacgctggtcctgatgcagctgatc
agccattggcgcgcaacgatggcgcaatcggacgccgacagaagttctggctcgacgcca
gcccagtccgcgcgtctcgcggccgaactcggcaagctcatggacgacatcgagcgtgag
aacgtctcgctctcagacattcaaaatctggttccggaaacctatgccgagcactggcag
aagaccgtcgactttctcaagatcgtgaccgagttctggcccgcgcatctcgaagccagc
ggcatgacctcgcccgaagcacgccgcaatgcgctgatcctcgccgaggccgagcgcatc
gcgaagctcgcgccggacgaaatcgtgatcgtcgccggcattacggggtccatacccgcg
accgttgaattgatgcgcgcggtggccgctcgtccgtccggagccatcgtgcttccggcg
ctcgatcaatcgctggacgatgccagctggagcgcgatcgtttctggccatcccgagcat
ccgcaattcggcttgaagaaattattggacgggctcaacgtcgaacgtggcgcggtgctc
acgctgccgggatttgaggccggcgatgttgaccgcacgcgctcggccttcgtcagcgaa
tccatgcgtccgtcgtcttcgaccgatcaatggcatcgctatgcgacgacggctgacaaa
ggcgaacttgagaaggcccttgccgggatatcgctgatcgaagcgccgtcggctcaggat
gaagctgaaaccgttgcgctgattttgcgggaagccatcgagacaccgggccagactgcc
gccctcgtttctcccgatcgtcttctcgcccggcgtgtcgcgatccggctcgaagcgtgg
ggcatccgcgttgacgacagcgccggacggccattcgcgaaaacggtgcccggagctttc
ctggcgctcgtcatcggcgcgatggtcagcgagtttgctccggcggaaacgatggccctg
ctccggcatccgttgtgccggctgaaattcaacgcattcgacatccgcaaatatgcgcgg
gcgctggagatcagcgcgttccggacgtcgtacctcgggcacgggctcgacggcatccgg
gcggcgctcgaaaccgccgaacgcgatcgcgcggaaaagaaacgcatgcacccggccgcg
cgcaggctctggtccgaggactgcgacggcgcgcgtgagcttgtcgcccgtttggctgct
gcgtttcagccgttggcggacctatatgcggcgaacggcgatcagacgttggcggaattc
gctcgcgctcatgccgaagccgcagaagcgcttgcacagctgccggacgacgatgcggcg
gccgaggcatccgccaatccgctctggcaaggcgagtccggagatacggcgtcgcgcttt
tttgcgaagctgttggacgacgcaacgccagcggtcgccatttccgcggccgactacgcc
gatctctacgcgacgttgctggcccgcgagaacgtgcgcgaacgcacagcggttcatccg
cgcatctccatctggggaccgttcgaagcgcgtctgcagcagccggatgttctcgtgctc
ggttcgctcaacgagggaacctggccggaagccgcggagccgggtgcgtggctcaatcgt
ccgatgcggcgcgatctcggattgccgtctccggaagaagagatcggccgcgccgcgcac
gacttcacctcgctgctcggagcgaaaacgatctacctgacgcgcgccgaaaaggtcgat
ggcgtgccgaccgtgccgtcgcgctggctgatgcgcatgcgcgcgctgctcaagggcatg
aagctcgagagcgtgctcgtcgcagacaagccctggcttgcttgggcgcgcgcgcgcgac
cggatcgtgggcaagcgcatcgccatcaagccgccggaaccgcgtcctgcgctggcgctc
aggccgcgccgcatgagcgttaccgacatcgaacgctggatcgcaaatccttacgcgacg
tatgcgcgccatatcctgaagctcgagccgttgccgccgctcggcgcgtctccggacgcg
agcctgcgcggcgcgctcgttcacgacgttctttcgcgctttgccaacgcgtttccggat
cgcctgccggacgatccgctcgcagaacttgaaaagatcgcggcggacgtacttcaaacc
tacacgggcaacgcgcgcatcgcggcattctggatgccgcggctcaaacgctttctctcg
tggttcgcagagggcgaagagaaacgccgcgagggcgttcgcagcgtcatagccgaaatc
tccggagccctcgtgcttgcgccgacgccggatcccttcacgctcacggcgcgcgccgac
cggatcgacgacacgggctcggccgtcatcatcaccgattacaagaccggcgccatcccg
aagcaggagtgggtcgagaacggacgctcgccgcagttgccgctcgaagccgcgatcgcg
cttggggaaacaggatttcccaatctcgcgggacgcacggtcgaggcgcttcgctacatt
cgcgcgtcgggtggtgaaccggcgggcgaagaacgcgcaatcaagtcgaacgatatcgga
acgctcgcggcgcaagcgcgccaaggtctcgaacgtttgattgccgaattcgatgatccg
gcgacgccttatcgcgcgcttcgccgcccgagttacagctacgactatgatgcctacgcg
caattggcacgcgtcgccgaatggtccgcccatgtcgacgaggaggcggcacaatga
DBGET
integrated database retrieval system
