Hyphomicrobium denitrificans ATCC 51888: Hden_2729
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Entry
Hden_2729 CDS
T01265
Name
(GenBank) DNA polymerase III, subunits gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn03030
DNA replication
hdn03430
Mismatch repair
hdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hden_2729
03430 Mismatch repair
Hden_2729
03440 Homologous recombination
Hden_2729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hdn03032
]
Hden_2729
03400 DNA repair and recombination proteins [BR:
hdn03400
]
Hden_2729
Enzymes [BR:
hdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Hden_2729
DNA replication proteins [BR:
hdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Hden_2729
DNA repair and recombination proteins [BR:
hdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Hden_2729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_gamma3
DUF3646
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
AAA_22
RuvB_N
AAA_30
AAA_5
AAA_16
AAA_14
AAA_18
AAA_19
DUF815
AAA_assoc_2
TIP49
SRP54
DNA_pol3_delta_C
Sigma54_activ_2
BET
SKI
PIF1
nSTAND3
DEAD
AAA_24
TsaE
Motif
Other DBs
NCBI-ProteinID:
ADJ24525
UniProt:
D8JTX7
LinkDB
All DBs
Position
complement(2804640..2806493)
Genome browser
AA seq
617 aa
AA seq
DB search
MAKKKSDASEGVTGSAGSEAPKPYVVLARKYRPATFDDLIGQSAMVTTLRNAFASGRIAQ
GYMLTGVRGVGKTTTARILARALNYEAPDSGNGAIDKPTIDMPGLGVHCKDIMEGRHPDV
LEIDAASNTGVDNIREIIESAQYTPLVARTKVFIIDEVHMLSKGAFNALLKTLEEPPAHV
RFIFATTEIRKVPVTVLSRCQRFDLRRVEQPVLAAHFKKISESEGAEADADALQLIARAA
EGSVRDGLSILDQAIAMGEGHVTAASVRDMLGLADRGRIFDLAEAIFRGDLPAALNGFAS
LHRDGAEASEVIGDLAEAVHAIARVKAVGEEPAGESLTAEEKKRLSDLASRLSMPYLSRA
WQMLIKGLEEVGRTPNPDVAAEMVLIRLAYTADLPTPDELIRGLGGSAMPARRPALAPAE
TRTSDTRPTVNTTTTAPRADAEHDDLATGDVFDFVGDDGELDDGDALDDDEQTSLSSASR
LPDPRSFVDVVTLVGEKRDVKLKMHLENDVSLVKFDAVAGSIDVFLLPDAPPELANDLRE
KLNLWTGRRWVVVLSKDAGQRPIGVVRREREAAELEQLKQHPAMRAVLQAFPDAKIAEVR
RLPGRTLDADDKESEAG
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaagaaatcagatgcgtctgagggcgtgacgggctcggctggttccgaagcg
ccgaagccctacgtcgtgctggcgcgcaaataccgccccgcgaccttcgacgatctgatc
ggccagtcggcgatggtgacgacgcttcgcaatgccttcgcgtcggggcgcatcgcgcag
ggctatatgctgaccggcgtgcgcggcgtcggcaagacgacgaccgcccgcatcctcgcc
cgcgcgctgaactacgaagcccccgattccggcaatggagccatcgacaagcccaccatc
gacatgccgggcctcggtgtccactgcaaggacatcatggaaggccgtcatcccgacgtg
ctcgaaatcgacgccgcctcgaacaccggcgtcgacaacatccgcgagatcatcgaaagc
gcgcaatatactccgctcgtcgcgcggacgaaggtgttcatcatcgacgaggttcacatg
ctgtcgaagggcgcgttcaacgcgctgctgaagacgctcgaggaaccgcccgcgcacgtc
cgcttcattttcgcgacgaccgaaatccgtaaagtccccgtcaccgtgttgtcgcgctgc
cagcgcttcgatctccgacgcgtcgagcagcctgtgcttgcggcgcacttcaagaagatt
tcggaaagcgaaggtgccgaggccgacgccgatgcgctgcagctcatcgcccgcgccgcc
gaaggctccgttcgcgacggcctctcgattctcgatcaggcaatcgcgatgggcgagggc
cacgtcaccgcggcgagcgtgcgcgacatgctcggcctcgccgatcgcggccgcatcttc
gatctcgccgaagctattttccgtggcgatcttcccgccgcgctcaacggctttgcgagc
ctgcatcgcgacggcgccgaagcttccgaagtcatcggcgatctcgccgaggcggtgcat
gcgatcgcgcgcgtcaaagccgtcggcgaagaaccggccggcgaaagtctgacggcggaa
gaaaagaagcggctgagcgatctcgcgagccgcctgtcgatgccgtacctctcgcgcgcc
tggcagatgctgatcaaaggcctcgaagaagtcgggcgcacgccgaacccggacgttgcc
gccgagatggtcctgatccgcctcgcgtacacggcggacctgccgacgcccgatgaattg
atcagaggcctcggcggctcggcaatgcccgcacgccgcccggctttggcccccgctgaa
acgcgcacgtcggacacgcggccgaccgtcaacacgacgacgaccgctccgcgtgcggat
gcggagcatgacgatctcgcaaccggcgacgtcttcgattttgtcggtgacgacggcgaa
ctcgacgacggcgacgctctcgacgacgatgagcagacgtcgctctcatcggcgtcgcga
ctgcctgatccgcgttcgttcgtcgacgtcgtgacgctcgtcggcgagaagcgcgacgtc
aaactcaagatgcatcttgagaacgacgtcagcctcgtgaagttcgatgcggtggcgggt
tcgatcgatgtcttcctgctgccggatgcgccgcccgagcttgcgaacgatcttcgcgag
aagcttaatctgtggacgggccggcgctgggtcgttgtgctttcgaaagacgcaggtcaa
cgcccgatcggcgtcgtgcgccgggagcgcgaagccgccgagcttgagcagctgaagcag
caccccgccatgcgcgccgtccttcaagccttccctgacgcgaagatcgcggaagtgcgc
cgcttgcccggcagaacgctggacgccgacgataaggaaagcgaagccggctga
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